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Cluster: HRGMv2_2240_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2240_5 HRGMv2_2240_5_98 122625 123374 - 3.A.1.7.5
TC HRGMv2_2240_5 HRGMv2_2240_5_99 123403 124278 - 3.A.1.7.5
TC HRGMv2_2240_5 HRGMv2_2240_5_100 124278 125162 - 3.A.1.7.5
STP HRGMv2_2240_5 HRGMv2_2240_5_101 125203 126150 - LysR_substrate
CAZyme HRGMv2_2240_5 HRGMv2_2240_5_102 126455 127459 - GT2
STP HRGMv2_2240_5 HRGMv2_2240_5_103 127463 128692 - Aminotran_1_2
pfam HRGMv2_2240_5 HRGMv2_2240_5_104 128721 129407 - Bac_transf
TC HRGMv2_2240_5 HRGMv2_2240_5_105 129440 131326 - 9.B.18.2.1
Gene ID: HRGMv2_2240_5_98
Type: TC
Location: 122625 - 123374 (-)
Gene ID: HRGMv2_2240_5_99
Type: TC
Location: 123403 - 124278 (-)
Gene ID: HRGMv2_2240_5_100
Type: TC
Location: 124278 - 125162 (-)
Gene ID: HRGMv2_2240_5_101
Type: STP
Location: 125203 - 126150 (-)
Gene ID: HRGMv2_2240_5_102
Type: CAZyme
Location: 126455 - 127459 (-)
Gene ID: HRGMv2_2240_5_103
Type: STP
Location: 127463 - 128692 (-)
Gene ID: HRGMv2_2240_5_104
Type: pfam
Location: 128721 - 129407 (-)
Gene ID: HRGMv2_2240_5_105
Type: TC
Location: 129440 - 131326 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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