Cluster: HRGMv2_2240_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2240
- CGC Family ID: CGCFAM_00011
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2240_5 | HRGMv2_2240_5_52 | 62546 | 63847 | - | 3.A.1.103.4 |
| TC | HRGMv2_2240_5 | HRGMv2_2240_5_53 | 63857 | 64633 | - | 3.A.1.103.4 |
| CAZyme | HRGMv2_2240_5 | HRGMv2_2240_5_54 | 64697 | 65929 | - | GT4 |
| CAZyme | HRGMv2_2240_5 | HRGMv2_2240_5_55 | 65937 | 67220 | - | GT4 |
| CAZyme | HRGMv2_2240_5 | HRGMv2_2240_5_56 | 67305 | 69137 | - | GH5_2 |
Gene ID: HRGMv2_2240_5_52
Type: TC
Location: 62546 - 63847 (-)
Type: TC
Location: 62546 - 63847 (-)
Gene ID: HRGMv2_2240_5_53
Type: TC
Location: 63857 - 64633 (-)
Type: TC
Location: 63857 - 64633 (-)
Gene ID: HRGMv2_2240_5_54
Type: CAZyme
Location: 64697 - 65929 (-)
Type: CAZyme
Location: 64697 - 65929 (-)
Gene ID: HRGMv2_2240_5_55
Type: CAZyme
Location: 65937 - 67220 (-)
Type: CAZyme
Location: 65937 - 67220 (-)
Gene ID: HRGMv2_2240_5_56
Type: CAZyme
Location: 67305 - 69137 (-)
Type: CAZyme
Location: 67305 - 69137 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-632
Species
CAG-632 sp900539185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.