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Cluster: HRGMv2_2234_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2234_5 HRGMv2_2234_5_2 630 2855 - 3.A.11.3.1
pfam HRGMv2_2234_5 HRGMv2_2234_5_3 2857 4326 - Mur_ligase | Mur_ligase_C | Mur_ligase_M
TC HRGMv2_2234_5 HRGMv2_2234_5_4 4849 6168 - 2.A.66.1.28
pfam HRGMv2_2234_5 HRGMv2_2234_5_5 6199 7137 - EamA | EamA
TC HRGMv2_2234_5 HRGMv2_2234_5_6 7318 8142 - 3.A.1.1.45
TC HRGMv2_2234_5 HRGMv2_2234_5_7 8142 9017 - 3.A.1.1.7
TC HRGMv2_2234_5 HRGMv2_2234_5_8 9203 10969 + 8.A.59.2.1
TF HRGMv2_2234_5 HRGMv2_2234_5_9 10956 11714 + HTH_AraC | HTH_AraC
STP HRGMv2_2234_5 HRGMv2_2234_5_10 11780 13177 - SBP_bac_1
CAZyme HRGMv2_2234_5 HRGMv2_2234_5_11 13310 15769 - GH31_4
Gene ID: HRGMv2_2234_5_2
Type: TC
Location: 630 - 2855 (-)
Gene ID: HRGMv2_2234_5_3
Type: pfam
Location: 2857 - 4326 (-)
Gene ID: HRGMv2_2234_5_4
Type: TC
Location: 4849 - 6168 (-)
Gene ID: HRGMv2_2234_5_5
Type: pfam
Location: 6199 - 7137 (-)
Gene ID: HRGMv2_2234_5_6
Type: TC
Location: 7318 - 8142 (-)
Gene ID: HRGMv2_2234_5_7
Type: TC
Location: 8142 - 9017 (-)
Gene ID: HRGMv2_2234_5_8
Type: TC
Location: 9203 - 10969 (+)
Gene ID: HRGMv2_2234_5_9
Type: TF
Location: 10956 - 11714 (+)
Gene ID: HRGMv2_2234_5_10
Type: STP
Location: 11780 - 13177 (-)
Gene ID: HRGMv2_2234_5_11
Type: CAZyme
Location: 13310 - 15769 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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