Cluster: HRGMv2_2234_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2234
- CGC Family ID: CGCFAM_00161
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2234_52 | HRGMv2_2234_52_7 | 7998 | 9374 | - | 9.B.174.1.1 |
| pfam | HRGMv2_2234_52 | HRGMv2_2234_52_8 | 9384 | 10229 | - | FtsX | FtsX_ECD |
| TC | HRGMv2_2234_52 | HRGMv2_2234_52_9 | 10282 | 10977 | - | 3.A.1.140.1 |
| pfam | HRGMv2_2234_52 | HRGMv2_2234_52_10 | 10998 | 12086 | - | HTH_30 | GGDEF_2 |
| TC | HRGMv2_2234_52 | HRGMv2_2234_52_11 | 12235 | 13107 | - | 2.A.115.1.1 |
| CAZyme | HRGMv2_2234_52 | HRGMv2_2234_52_12 | 13113 | 13799 | - | GT26 |
Gene ID: HRGMv2_2234_52_7
Type: TC
Location: 7998 - 9374 (-)
Type: TC
Location: 7998 - 9374 (-)
Gene ID: HRGMv2_2234_52_8
Type: pfam
Location: 9384 - 10229 (-)
Type: pfam
Location: 9384 - 10229 (-)
Gene ID: HRGMv2_2234_52_9
Type: TC
Location: 10282 - 10977 (-)
Type: TC
Location: 10282 - 10977 (-)
Gene ID: HRGMv2_2234_52_10
Type: pfam
Location: 10998 - 12086 (-)
Type: pfam
Location: 10998 - 12086 (-)
Gene ID: HRGMv2_2234_52_11
Type: TC
Location: 12235 - 13107 (-)
Type: TC
Location: 12235 - 13107 (-)
Gene ID: HRGMv2_2234_52_12
Type: CAZyme
Location: 13113 - 13799 (-)
Type: CAZyme
Location: 13113 - 13799 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
W0P33-017
Species
W0P33-017 sp934351445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.