Cluster: HRGMv2_2234_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2234
- CGC Family ID: CGCFAM_00103
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2234_47 | HRGMv2_2234_47_6 | 5124 | 7052 | - | GH127 |
| CAZyme | HRGMv2_2234_47 | HRGMv2_2234_47_7 | 7132 | 8652 | - | GH51_1 |
| TC | HRGMv2_2234_47 | HRGMv2_2234_47_8 | 8668 | 9546 | - | 3.A.1.1.34 |
| TC | HRGMv2_2234_47 | HRGMv2_2234_47_9 | 9549 | 10502 | - | 3.A.1.1.34 |
Gene ID: HRGMv2_2234_47_6
Type: CAZyme
Location: 5124 - 7052 (-)
Type: CAZyme
Location: 5124 - 7052 (-)
Gene ID: HRGMv2_2234_47_7
Type: CAZyme
Location: 7132 - 8652 (-)
Type: CAZyme
Location: 7132 - 8652 (-)
Gene ID: HRGMv2_2234_47_8
Type: TC
Location: 8668 - 9546 (-)
Type: TC
Location: 8668 - 9546 (-)
Gene ID: HRGMv2_2234_47_9
Type: TC
Location: 9549 - 10502 (-)
Type: TC
Location: 9549 - 10502 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
W0P33-017
Species
W0P33-017 sp934351445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2234_47_8 | vegetarian > vegan | 1.85159 | 0.01882 |