Cluster: HRGMv2_2234_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2234
- CGC Family ID: CGCFAM_00809
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2234_40 | HRGMv2_2234_40_5 | 5583 | 6230 | - | 2.A.38.4.4 |
| TC | HRGMv2_2234_40 | HRGMv2_2234_40_6 | 6259 | 7608 | - | 2.A.38.4.1 |
| NULL(UNKNOWN) | HRGMv2_2234_40 | HRGMv2_2234_40_7 | 7775 | 8266 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2234_40 | HRGMv2_2234_40_8 | 8382 | 11045 | - | CAP | Big_2 |
| CAZyme | HRGMv2_2234_40 | HRGMv2_2234_40_9 | 11344 | 13035 | + | GH13_31 |
| TC | HRGMv2_2234_40 | HRGMv2_2234_40_10 | 12944 | 14035 | - | 4.D.2.1.5 |
Gene ID: HRGMv2_2234_40_5
Type: TC
Location: 5583 - 6230 (-)
Type: TC
Location: 5583 - 6230 (-)
Gene ID: HRGMv2_2234_40_6
Type: TC
Location: 6259 - 7608 (-)
Type: TC
Location: 6259 - 7608 (-)
Gene ID: HRGMv2_2234_40_7
Type:
Location: 7775 - 8266 (-)
Type:
Location: 7775 - 8266 (-)
Gene ID: HRGMv2_2234_40_8
Type: pfam
Location: 8382 - 11045 (-)
Type: pfam
Location: 8382 - 11045 (-)
Gene ID: HRGMv2_2234_40_9
Type: CAZyme
Location: 11344 - 13035 (+)
Type: CAZyme
Location: 11344 - 13035 (+)
Gene ID: HRGMv2_2234_40_10
Type: TC
Location: 12944 - 14035 (-)
Type: TC
Location: 12944 - 14035 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
W0P33-017
Species
W0P33-017 sp934351445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.