Cluster: HRGMv2_2234_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2234
- CGC Family ID: CGCFAM_01689
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2234_30 | HRGMv2_2234_30_2 | 131 | 1864 | + | 8.A.59.2.1 |
| TF | HRGMv2_2234_30 | HRGMv2_2234_30_3 | 1861 | 3480 | + | HTH_AraC |
| pfam | HRGMv2_2234_30 | HRGMv2_2234_30_4 | 3789 | 4688 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_2234_30 | HRGMv2_2234_30_5 | 4743 | 5756 | + | GH177 |
| TC | HRGMv2_2234_30 | HRGMv2_2234_30_6 | 5886 | 7268 | + | 2.A.2.3.2 |
| TC | HRGMv2_2234_30 | HRGMv2_2234_30_7 | 7270 | 7881 | + | 2.A.115.2.14 |
Gene ID: HRGMv2_2234_30_2
Type: TC
Location: 131 - 1864 (+)
Type: TC
Location: 131 - 1864 (+)
Gene ID: HRGMv2_2234_30_3
Type: TF
Location: 1861 - 3480 (+)
Type: TF
Location: 1861 - 3480 (+)
Gene ID: HRGMv2_2234_30_4
Type: pfam
Location: 3789 - 4688 (+)
Type: pfam
Location: 3789 - 4688 (+)
Gene ID: HRGMv2_2234_30_5
Type: CAZyme
Location: 4743 - 5756 (+)
Type: CAZyme
Location: 4743 - 5756 (+)
Gene ID: HRGMv2_2234_30_6
Type: TC
Location: 5886 - 7268 (+)
Type: TC
Location: 5886 - 7268 (+)
Gene ID: HRGMv2_2234_30_7
Type: TC
Location: 7270 - 7881 (+)
Type: TC
Location: 7270 - 7881 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
W0P33-017
Species
W0P33-017 sp934351445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.