Cluster: HRGMv2_2234_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2234
- CGC Family ID: CGCFAM_00149
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2234_14 | HRGMv2_2234_14_22 | 25632 | 26384 | + | 9.B.104.1.3 |
| pfam | HRGMv2_2234_14 | HRGMv2_2234_14_23 | 26500 | 27495 | + | SCP2 |
| pfam | HRGMv2_2234_14 | HRGMv2_2234_14_24 | 27538 | 27951 | + | HIT | DcpS_C |
| CAZyme | HRGMv2_2234_14 | HRGMv2_2234_14_25 | 28061 | 29125 | - | GT28 |
| NULL(UNKNOWN) | HRGMv2_2234_14 | HRGMv2_2234_14_26 | 29408 | 29740 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2234_14 | HRGMv2_2234_14_27 | 29971 | 31221 | + | Hydrolase_2 |
| TC | HRGMv2_2234_14 | HRGMv2_2234_14_28 | 31339 | 32265 | + | 8.A.21.2.2 |
Gene ID: HRGMv2_2234_14_22
Type: TC
Location: 25632 - 26384 (+)
Type: TC
Location: 25632 - 26384 (+)
Gene ID: HRGMv2_2234_14_23
Type: pfam
Location: 26500 - 27495 (+)
Type: pfam
Location: 26500 - 27495 (+)
Gene ID: HRGMv2_2234_14_24
Type: pfam
Location: 27538 - 27951 (+)
Type: pfam
Location: 27538 - 27951 (+)
Gene ID: HRGMv2_2234_14_25
Type: CAZyme
Location: 28061 - 29125 (-)
Type: CAZyme
Location: 28061 - 29125 (-)
Gene ID: HRGMv2_2234_14_26
Type:
Location: 29408 - 29740 (+)
Type:
Location: 29408 - 29740 (+)
Gene ID: HRGMv2_2234_14_27
Type: pfam
Location: 29971 - 31221 (+)
Type: pfam
Location: 29971 - 31221 (+)
Gene ID: HRGMv2_2234_14_28
Type: TC
Location: 31339 - 32265 (+)
Type: TC
Location: 31339 - 32265 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
W0P33-017
Species
W0P33-017 sp934351445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.