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Cluster: HRGMv2_2231_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2231_3 HRGMv2_2231_3_54 55829 56650 + GT2
CAZyme HRGMv2_2231_3 HRGMv2_2231_3_55 56671 57984 + GT4
CAZyme HRGMv2_2231_3 HRGMv2_2231_3_56 57981 59195 + GT4
CAZyme HRGMv2_2231_3 HRGMv2_2231_3_57 59185 60210 + GT2
CAZyme HRGMv2_2231_3 HRGMv2_2231_3_58 60207 61289 + GT100
TC HRGMv2_2231_3 HRGMv2_2231_3_59 61308 63047 + 3.A.1.106.15
CAZyme HRGMv2_2231_3 HRGMv2_2231_3_60 63048 64079 + GT2
pfam HRGMv2_2231_3 HRGMv2_2231_3_61 64220 65809 + DUF5722
TC HRGMv2_2231_3 HRGMv2_2231_3_62 65848 66852 + 9.B.18.2.1
STP HRGMv2_2231_3 HRGMv2_2231_3_63 67098 68294 + Aminotran_1_2
CAZyme HRGMv2_2231_3 HRGMv2_2231_3_64 68306 69271 + GT2
Gene ID: HRGMv2_2231_3_54
Type: CAZyme
Location: 55829 - 56650 (+)
Gene ID: HRGMv2_2231_3_55
Type: CAZyme
Location: 56671 - 57984 (+)
Gene ID: HRGMv2_2231_3_56
Type: CAZyme
Location: 57981 - 59195 (+)
Gene ID: HRGMv2_2231_3_57
Type: CAZyme
Location: 59185 - 60210 (+)
Gene ID: HRGMv2_2231_3_58
Type: CAZyme
Location: 60207 - 61289 (+)
Gene ID: HRGMv2_2231_3_59
Type: TC
Location: 61308 - 63047 (+)
Gene ID: HRGMv2_2231_3_60
Type: CAZyme
Location: 63048 - 64079 (+)
Gene ID: HRGMv2_2231_3_61
Type: pfam
Location: 64220 - 65809 (+)
Gene ID: HRGMv2_2231_3_62
Type: TC
Location: 65848 - 66852 (+)
Gene ID: HRGMv2_2231_3_63
Type: STP
Location: 67098 - 68294 (+)
Gene ID: HRGMv2_2231_3_64
Type: CAZyme
Location: 68306 - 69271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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