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Cluster: HRGMv2_2231_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2231_2 HRGMv2_2231_2_86 86379 88085 + 3.A.1.5.18
TC HRGMv2_2231_2 HRGMv2_2231_2_87 88141 89178 + 3.A.1.5.20
TC HRGMv2_2231_2 HRGMv2_2231_2_88 89222 90154 + 3.A.1.5.20
TC HRGMv2_2231_2 HRGMv2_2231_2_89 90167 91189 + 3.A.1.5.12
TC HRGMv2_2231_2 HRGMv2_2231_2_90 91186 92196 + 3.A.1.5.29
TC HRGMv2_2231_2 HRGMv2_2231_2_91 92218 93867 + 3.D.10.1.3
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_92 93867 94838 + CE7
peptidase HRGMv2_2231_2 HRGMv2_2231_2_93 94876 95658 + S09.UNW
TF HRGMv2_2231_2 HRGMv2_2231_2_94 95946 97538 + HTH_AraC
TC HRGMv2_2231_2 HRGMv2_2231_2_95 97535 99310 + 8.A.59.2.1
STP HRGMv2_2231_2 HRGMv2_2231_2_96 99330 100586 + SBP_bac_1
TC HRGMv2_2231_2 HRGMv2_2231_2_97 100784 102772 + 1.B.52.2.2
TC HRGMv2_2231_2 HRGMv2_2231_2_98 102952 104352 + 3.A.1.1.45
TC HRGMv2_2231_2 HRGMv2_2231_2_99 104735 105586 + 3.A.1.1.45
TC HRGMv2_2231_2 HRGMv2_2231_2_100 105586 106428 + 3.A.1.1.45
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_101 106453 108711 + GT35
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_102 108730 110211 + GH77
NULL(UNKNOWN) HRGMv2_2231_2 HRGMv2_2231_2_103 110777 111466 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2231_2 HRGMv2_2231_2_104 111649 112110 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2231_2 HRGMv2_2231_2_105 112098 113555 - 9.B.34.1.3
pfam HRGMv2_2231_2 HRGMv2_2231_2_106 113641 115008 - FAD-depend_C
TC HRGMv2_2231_2 HRGMv2_2231_2_107 115217 115981 + 3.A.7.11.1
Gene ID: HRGMv2_2231_2_86
Type: TC
Location: 86379 - 88085 (+)
Gene ID: HRGMv2_2231_2_87
Type: TC
Location: 88141 - 89178 (+)
Gene ID: HRGMv2_2231_2_88
Type: TC
Location: 89222 - 90154 (+)
Gene ID: HRGMv2_2231_2_89
Type: TC
Location: 90167 - 91189 (+)
Gene ID: HRGMv2_2231_2_90
Type: TC
Location: 91186 - 92196 (+)
Gene ID: HRGMv2_2231_2_91
Type: TC
Location: 92218 - 93867 (+)
Gene ID: HRGMv2_2231_2_92
Type: CAZyme
Location: 93867 - 94838 (+)
Gene ID: HRGMv2_2231_2_93
Type: peptidase
Location: 94876 - 95658 (+)
Gene ID: HRGMv2_2231_2_94
Type: TF
Location: 95946 - 97538 (+)
Gene ID: HRGMv2_2231_2_95
Type: TC
Location: 97535 - 99310 (+)
Gene ID: HRGMv2_2231_2_96
Type: STP
Location: 99330 - 100586 (+)
Gene ID: HRGMv2_2231_2_97
Type: TC
Location: 100784 - 102772 (+)
Gene ID: HRGMv2_2231_2_98
Type: TC
Location: 102952 - 104352 (+)
Gene ID: HRGMv2_2231_2_99
Type: TC
Location: 104735 - 105586 (+)
Gene ID: HRGMv2_2231_2_100
Type: TC
Location: 105586 - 106428 (+)
Gene ID: HRGMv2_2231_2_101
Type: CAZyme
Location: 106453 - 108711 (+)
Gene ID: HRGMv2_2231_2_102
Type: CAZyme
Location: 108730 - 110211 (+)
Gene ID: HRGMv2_2231_2_103
Type:
Location: 110777 - 111466 (+)
Gene ID: HRGMv2_2231_2_104
Type:
Location: 111649 - 112110 (+)
Gene ID: HRGMv2_2231_2_105
Type: TC
Location: 112098 - 113555 (-)
Gene ID: HRGMv2_2231_2_106
Type: pfam
Location: 113641 - 115008 (-)
Gene ID: HRGMv2_2231_2_107
Type: TC
Location: 115217 - 115981 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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