dbCAN Logo

Cluster: HRGMv2_2231_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2231_2 HRGMv2_2231_2_47 50409 51785 + 3.A.1.1.4
TC HRGMv2_2231_2 HRGMv2_2231_2_48 51921 52799 + 3.A.1.1.4
TC HRGMv2_2231_2 HRGMv2_2231_2_49 52792 53598 + 3.A.1.1.4
NULL(UNKNOWN) HRGMv2_2231_2 HRGMv2_2231_2_50 53598 54059 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_51 54010 55308 + GH136
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_52 55354 57516 + GH112
Gene ID: HRGMv2_2231_2_47
Type: TC
Location: 50409 - 51785 (+)
Gene ID: HRGMv2_2231_2_48
Type: TC
Location: 51921 - 52799 (+)
Gene ID: HRGMv2_2231_2_49
Type: TC
Location: 52792 - 53598 (+)
Gene ID: HRGMv2_2231_2_50
Type:
Location: 53598 - 54059 (+)
Gene ID: HRGMv2_2231_2_51
Type: CAZyme
Location: 54010 - 55308 (+)
Gene ID: HRGMv2_2231_2_52
Type: CAZyme
Location: 55354 - 57516 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2231_2_49 vegetarian > omnivore 1.16243 0.00181
HRGMv2_2231_2_50 vegetarian > omnivore 2.12592 0.00181
HRGMv2_2231_2_50 vegetarian > vegan 1.44000 0.00566
HRGMv2_2231_2_51 vegetarian > omnivore 1.91999 0.00181
HRGMv2_2231_2_51 vegetarian > vegan 1.59162 0.00566

🧭 Explore Read Mapping of CGC

← Back to Cluster List