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Cluster: HRGMv2_2231_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_3 1361 3688 + GH95
TF HRGMv2_2231_2 HRGMv2_2231_2_4 3930 6029 - HTH_AraC
TC HRGMv2_2231_2 HRGMv2_2231_2_5 6428 7363 + 3.A.1.1.10
TC HRGMv2_2231_2 HRGMv2_2231_2_6 7385 8299 + 3.A.1.1.29
STP HRGMv2_2231_2 HRGMv2_2231_2_7 8404 10089 + SBP_bac_1
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_8 10293 13064 + GH95
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_9 13079 14296 + GH136
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_10 14320 15516 + GH109
TF HRGMv2_2231_2 HRGMv2_2231_2_11 16149 17723 - HTH_AraC | HTH_AraC
TC HRGMv2_2231_2 HRGMv2_2231_2_12 17725 19488 - 8.A.59.2.1
TC HRGMv2_2231_2 HRGMv2_2231_2_13 19684 21081 + 3.A.1.1.18
TC HRGMv2_2231_2 HRGMv2_2231_2_14 21159 22055 + 3.A.1.1.18
TC HRGMv2_2231_2 HRGMv2_2231_2_15 22071 22925 + 3.A.1.1.45
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_16 22944 24356 + GH29
NULL(UNKNOWN) HRGMv2_2231_2 HRGMv2_2231_2_17 24370 24579 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2231_2 HRGMv2_2231_2_18 24813 26981 + GH112
Gene ID: HRGMv2_2231_2_3
Type: CAZyme
Location: 1361 - 3688 (+)
Gene ID: HRGMv2_2231_2_4
Type: TF
Location: 3930 - 6029 (-)
Gene ID: HRGMv2_2231_2_5
Type: TC
Location: 6428 - 7363 (+)
Gene ID: HRGMv2_2231_2_6
Type: TC
Location: 7385 - 8299 (+)
Gene ID: HRGMv2_2231_2_7
Type: STP
Location: 8404 - 10089 (+)
Gene ID: HRGMv2_2231_2_8
Type: CAZyme
Location: 10293 - 13064 (+)
Gene ID: HRGMv2_2231_2_9
Type: CAZyme
Location: 13079 - 14296 (+)
Gene ID: HRGMv2_2231_2_10
Type: CAZyme
Location: 14320 - 15516 (+)
Gene ID: HRGMv2_2231_2_11
Type: TF
Location: 16149 - 17723 (-)
Gene ID: HRGMv2_2231_2_12
Type: TC
Location: 17725 - 19488 (-)
Gene ID: HRGMv2_2231_2_13
Type: TC
Location: 19684 - 21081 (+)
Gene ID: HRGMv2_2231_2_14
Type: TC
Location: 21159 - 22055 (+)
Gene ID: HRGMv2_2231_2_15
Type: TC
Location: 22071 - 22925 (+)
Gene ID: HRGMv2_2231_2_16
Type: CAZyme
Location: 22944 - 24356 (+)
Gene ID: HRGMv2_2231_2_17
Type:
Location: 24370 - 24579 (+)
Gene ID: HRGMv2_2231_2_18
Type: CAZyme
Location: 24813 - 26981 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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