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Cluster: HRGMv2_2231_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2231_19 HRGMv2_2231_19_23 27510 28907 + 2.A.22.5.3
STP HRGMv2_2231_19 HRGMv2_2231_19_24 29265 30095 + SBP_bac_3 | SBP_bac_3
TC HRGMv2_2231_19 HRGMv2_2231_19_25 30114 30794 + 3.A.1.3.14
TC HRGMv2_2231_19 HRGMv2_2231_19_26 30807 31592 + 3.A.1.3.14
CAZyme HRGMv2_2231_19 HRGMv2_2231_19_27 31807 34122 + GH2
TC HRGMv2_2231_19 HRGMv2_2231_19_28 34154 35560 + 2.A.2.3.5
TC HRGMv2_2231_19 HRGMv2_2231_19_29 35793 37511 + 1.B.52.2.2
Gene ID: HRGMv2_2231_19_23
Type: TC
Location: 27510 - 28907 (+)
Gene ID: HRGMv2_2231_19_24
Type: STP
Location: 29265 - 30095 (+)
Gene ID: HRGMv2_2231_19_25
Type: TC
Location: 30114 - 30794 (+)
Gene ID: HRGMv2_2231_19_26
Type: TC
Location: 30807 - 31592 (+)
Gene ID: HRGMv2_2231_19_27
Type: CAZyme
Location: 31807 - 34122 (+)
Gene ID: HRGMv2_2231_19_28
Type: TC
Location: 34154 - 35560 (+)
Gene ID: HRGMv2_2231_19_29
Type: TC
Location: 35793 - 37511 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2231_19_29 vegetarian > omnivore 1.15488 0.00181

🧭 Explore Read Mapping of CGC

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