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Cluster: HRGMv2_2231_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2231_17 HRGMv2_2231_17_34 33614 35065 - GH13_18
TF HRGMv2_2231_17 HRGMv2_2231_17_35 35140 36123 - LacI
TC HRGMv2_2231_17 HRGMv2_2231_17_36 36228 37100 - 3.A.1.1.45
TC HRGMv2_2231_17 HRGMv2_2231_17_37 37100 37969 - 3.A.1.1.3
pfam HRGMv2_2231_17 HRGMv2_2231_17_38 38030 39406 - SBP_bac_1 | SBP_bac_8
TC HRGMv2_2231_17 HRGMv2_2231_17_39 39702 40655 + 8.A.5.1.4
pfam HRGMv2_2231_17 HRGMv2_2231_17_40 40719 41573 + F_bP_aldolase
STP HRGMv2_2231_17 HRGMv2_2231_17_41 41599 42588 + PfkB
TC HRGMv2_2231_17 HRGMv2_2231_17_42 42664 43869 + 2.A.1.65.8
TC HRGMv2_2231_17 HRGMv2_2231_17_43 43892 45268 + 2.A.66.1.33
Gene ID: HRGMv2_2231_17_34
Type: CAZyme
Location: 33614 - 35065 (-)
Gene ID: HRGMv2_2231_17_35
Type: TF
Location: 35140 - 36123 (-)
Gene ID: HRGMv2_2231_17_36
Type: TC
Location: 36228 - 37100 (-)
Gene ID: HRGMv2_2231_17_37
Type: TC
Location: 37100 - 37969 (-)
Gene ID: HRGMv2_2231_17_38
Type: pfam
Location: 38030 - 39406 (-)
Gene ID: HRGMv2_2231_17_39
Type: TC
Location: 39702 - 40655 (+)
Gene ID: HRGMv2_2231_17_40
Type: pfam
Location: 40719 - 41573 (+)
Gene ID: HRGMv2_2231_17_41
Type: STP
Location: 41599 - 42588 (+)
Gene ID: HRGMv2_2231_17_42
Type: TC
Location: 42664 - 43869 (+)
Gene ID: HRGMv2_2231_17_43
Type: TC
Location: 43892 - 45268 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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