Cluster: HRGMv2_2231_CGC21
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2231
- CGC Family ID: CGCFAM_00168
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2231_10 | HRGMv2_2231_10_63 | 68726 | 69685 | - | GT2 |
| pfam | HRGMv2_2231_10 | HRGMv2_2231_10_64 | 69786 | 71018 | - | LytR_cpsA_psr |
| TC | HRGMv2_2231_10 | HRGMv2_2231_10_65 | 71097 | 72506 | - | 9.B.18.1.1 |
| pfam | HRGMv2_2231_10 | HRGMv2_2231_10_66 | 72581 | 73663 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_2231_10 | HRGMv2_2231_10_67 | 73702 | 74682 | - | GT2 |
| CAZyme | HRGMv2_2231_10 | HRGMv2_2231_10_68 | 74686 | 76119 | - | GT2 |
| pfam | HRGMv2_2231_10 | HRGMv2_2231_10_69 | 76322 | 78043 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_2231_10 | HRGMv2_2231_10_70 | 78312 | 80294 | - | GT2 | GT2 |
| CAZyme | HRGMv2_2231_10 | HRGMv2_2231_10_71 | 80353 | 82518 | - | GT2 |
| pfam | HRGMv2_2231_10 | HRGMv2_2231_10_72 | 82555 | 84675 | - | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_2231_10 | HRGMv2_2231_10_73 | 84731 | 86035 | - | 3.A.1.103.6 |
| TC | HRGMv2_2231_10 | HRGMv2_2231_10_74 | 86067 | 87074 | - | 3.A.1.104.1 |
| pfam | HRGMv2_2231_10 | HRGMv2_2231_10_75 | 87094 | 87657 | - | dTDP_sugar_isom |
| CAZyme | HRGMv2_2231_10 | HRGMv2_2231_10_76 | 87678 | 88976 | - | GH25 |
Gene ID: HRGMv2_2231_10_63
Type: CAZyme
Location: 68726 - 69685 (-)
Type: CAZyme
Location: 68726 - 69685 (-)
Gene ID: HRGMv2_2231_10_64
Type: pfam
Location: 69786 - 71018 (-)
Type: pfam
Location: 69786 - 71018 (-)
Gene ID: HRGMv2_2231_10_65
Type: TC
Location: 71097 - 72506 (-)
Type: TC
Location: 71097 - 72506 (-)
Gene ID: HRGMv2_2231_10_66
Type: pfam
Location: 72581 - 73663 (-)
Type: pfam
Location: 72581 - 73663 (-)
Gene ID: HRGMv2_2231_10_67
Type: CAZyme
Location: 73702 - 74682 (-)
Type: CAZyme
Location: 73702 - 74682 (-)
Gene ID: HRGMv2_2231_10_68
Type: CAZyme
Location: 74686 - 76119 (-)
Type: CAZyme
Location: 74686 - 76119 (-)
Gene ID: HRGMv2_2231_10_69
Type: pfam
Location: 76322 - 78043 (-)
Type: pfam
Location: 76322 - 78043 (-)
Gene ID: HRGMv2_2231_10_70
Type: CAZyme
Location: 78312 - 80294 (-)
Type: CAZyme
Location: 78312 - 80294 (-)
Gene ID: HRGMv2_2231_10_71
Type: CAZyme
Location: 80353 - 82518 (-)
Type: CAZyme
Location: 80353 - 82518 (-)
Gene ID: HRGMv2_2231_10_72
Type: pfam
Location: 82555 - 84675 (-)
Type: pfam
Location: 82555 - 84675 (-)
Gene ID: HRGMv2_2231_10_73
Type: TC
Location: 84731 - 86035 (-)
Type: TC
Location: 84731 - 86035 (-)
Gene ID: HRGMv2_2231_10_74
Type: TC
Location: 86067 - 87074 (-)
Type: TC
Location: 86067 - 87074 (-)
Gene ID: HRGMv2_2231_10_75
Type: pfam
Location: 87094 - 87657 (-)
Type: pfam
Location: 87094 - 87657 (-)
Gene ID: HRGMv2_2231_10_76
Type: CAZyme
Location: 87678 - 88976 (-)
Type: CAZyme
Location: 87678 - 88976 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UMGS2037
Species
UMGS2037 sp934371505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.