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Cluster: HRGMv2_2231_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2231_5 HRGMv2_2231_5_28 31264 32478 + 3.A.1.2.17
TC HRGMv2_2231_5 HRGMv2_2231_5_29 32680 34215 + 3.A.1.2.12
TC HRGMv2_2231_5 HRGMv2_2231_5_30 34208 35287 + 3.A.1.2.17
TC HRGMv2_2231_5 HRGMv2_2231_5_31 35288 36247 + 3.A.1.2.12
TC HRGMv2_2231_5 HRGMv2_2231_5_32 36398 37825 + 3.B.1.1.5
pfam HRGMv2_2231_5 HRGMv2_2231_5_33 37860 38606 + OAD_gamma
pfam HRGMv2_2231_5 HRGMv2_2231_5_34 38642 39016 + Biotin_lipoyl
TC HRGMv2_2231_5 HRGMv2_2231_5_35 39064 40212 + 3.B.1.1.3
TC HRGMv2_2231_5 HRGMv2_2231_5_36 40236 41663 + 3.B.1.1.6
pfam HRGMv2_2231_5 HRGMv2_2231_5_37 41759 42361 + Hydrolase | HAD_2
pfam HRGMv2_2231_5 HRGMv2_2231_5_38 42341 42604 - DUF4321
CAZyme HRGMv2_2231_5 HRGMv2_2231_5_39 43299 45185 + GH20
pfam HRGMv2_2231_5 HRGMv2_2231_5_40 45201 45827 + SPASM
pfam HRGMv2_2231_5 HRGMv2_2231_5_41 45845 47104 + MFS_3 | MFS_1
TC HRGMv2_2231_5 HRGMv2_2231_5_42 47310 49100 + 3.A.1.106.2
TC HRGMv2_2231_5 HRGMv2_2231_5_43 49141 50892 - 8.A.59.2.1
TF HRGMv2_2231_5 HRGMv2_2231_5_44 50901 51647 - HTH_AraC | HTH_AraC
TC HRGMv2_2231_5 HRGMv2_2231_5_45 51975 52943 + 3.A.1.1.10
TC HRGMv2_2231_5 HRGMv2_2231_5_46 52965 53888 + 3.A.1.1.10
Gene ID: HRGMv2_2231_5_28
Type: TC
Location: 31264 - 32478 (+)
Gene ID: HRGMv2_2231_5_29
Type: TC
Location: 32680 - 34215 (+)
Gene ID: HRGMv2_2231_5_30
Type: TC
Location: 34208 - 35287 (+)
Gene ID: HRGMv2_2231_5_31
Type: TC
Location: 35288 - 36247 (+)
Gene ID: HRGMv2_2231_5_32
Type: TC
Location: 36398 - 37825 (+)
Gene ID: HRGMv2_2231_5_33
Type: pfam
Location: 37860 - 38606 (+)
Gene ID: HRGMv2_2231_5_34
Type: pfam
Location: 38642 - 39016 (+)
Gene ID: HRGMv2_2231_5_35
Type: TC
Location: 39064 - 40212 (+)
Gene ID: HRGMv2_2231_5_36
Type: TC
Location: 40236 - 41663 (+)
Gene ID: HRGMv2_2231_5_37
Type: pfam
Location: 41759 - 42361 (+)
Gene ID: HRGMv2_2231_5_38
Type: pfam
Location: 42341 - 42604 (-)
Gene ID: HRGMv2_2231_5_39
Type: CAZyme
Location: 43299 - 45185 (+)
Gene ID: HRGMv2_2231_5_40
Type: pfam
Location: 45201 - 45827 (+)
Gene ID: HRGMv2_2231_5_41
Type: pfam
Location: 45845 - 47104 (+)
Gene ID: HRGMv2_2231_5_42
Type: TC
Location: 47310 - 49100 (+)
Gene ID: HRGMv2_2231_5_43
Type: TC
Location: 49141 - 50892 (-)
Gene ID: HRGMv2_2231_5_44
Type: TF
Location: 50901 - 51647 (-)
Gene ID: HRGMv2_2231_5_45
Type: TC
Location: 51975 - 52943 (+)
Gene ID: HRGMv2_2231_5_46
Type: TC
Location: 52965 - 53888 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2231_5_34 vegetarian > omnivore 1.33701 0.00181
HRGMv2_2231_5_34 vegetarian > vegan 1.59873 0.00566

🧭 Explore Read Mapping of CGC

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