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Cluster: HRGMv2_2231_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2231_4 HRGMv2_2231_4_55 59034 61625 + GH3
TF HRGMv2_2231_4 HRGMv2_2231_4_56 61746 62177 + Rrf2
TC HRGMv2_2231_4 HRGMv2_2231_4_57 62851 63702 + 3.A.1.24.5
TC HRGMv2_2231_4 HRGMv2_2231_4_58 63790 64797 + 3.A.1.24.2
TC HRGMv2_2231_4 HRGMv2_2231_4_59 64790 65455 + 3.A.1.24.5
pfam HRGMv2_2231_4 HRGMv2_2231_4_60 65462 65797 + BPD_transp_1
TC HRGMv2_2231_4 HRGMv2_2231_4_61 65890 66258 + 3.A.1.3.21
TC HRGMv2_2231_4 HRGMv2_2231_4_62 66268 66603 + 3.A.1.3.26
Gene ID: HRGMv2_2231_4_55
Type: CAZyme
Location: 59034 - 61625 (+)
Gene ID: HRGMv2_2231_4_56
Type: TF
Location: 61746 - 62177 (+)
Gene ID: HRGMv2_2231_4_57
Type: TC
Location: 62851 - 63702 (+)
Gene ID: HRGMv2_2231_4_58
Type: TC
Location: 63790 - 64797 (+)
Gene ID: HRGMv2_2231_4_59
Type: TC
Location: 64790 - 65455 (+)
Gene ID: HRGMv2_2231_4_60
Type: pfam
Location: 65462 - 65797 (+)
Gene ID: HRGMv2_2231_4_61
Type: TC
Location: 65890 - 66258 (+)
Gene ID: HRGMv2_2231_4_62
Type: TC
Location: 66268 - 66603 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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