Cluster: HRGMv2_2225_CGC58
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2225
- CGC Family ID: CGCFAM_06109
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2225_99 | HRGMv2_2225_99_9 | 5844 | 7673 | - | 3.A.1.120.6 |
| peptidase | HRGMv2_2225_99 | HRGMv2_2225_99_10 | 7704 | 8879 | - | S12.UPW |
| CAZyme | HRGMv2_2225_99 | HRGMv2_2225_99_11 | 9087 | 10583 | - | GH51_1 |
| TF | HRGMv2_2225_99 | HRGMv2_2225_99_12 | 10838 | 11755 | + | MarR |
| TC | HRGMv2_2225_99 | HRGMv2_2225_99_13 | 11736 | 13253 | - | 3.A.1.120.5 |
Gene ID: HRGMv2_2225_99_9
Type: TC
Location: 5844 - 7673 (-)
Type: TC
Location: 5844 - 7673 (-)
Gene ID: HRGMv2_2225_99_10
Type: peptidase
Location: 7704 - 8879 (-)
Type: peptidase
Location: 7704 - 8879 (-)
Gene ID: HRGMv2_2225_99_11
Type: CAZyme
Location: 9087 - 10583 (-)
Type: CAZyme
Location: 9087 - 10583 (-)
Gene ID: HRGMv2_2225_99_12
Type: TF
Location: 10838 - 11755 (+)
Type: TF
Location: 10838 - 11755 (+)
Gene ID: HRGMv2_2225_99_13
Type: TC
Location: 11736 - 13253 (-)
Type: TC
Location: 11736 - 13253 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934402315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.