dbCAN Logo

Cluster: HRGMv2_2225_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2225_70 HRGMv2_2225_70_2 907 2748 - 8.A.59.2.1
pfam HRGMv2_2225_70 HRGMv2_2225_70_3 2795 3184 - LysM
pfam HRGMv2_2225_70 HRGMv2_2225_70_4 3512 4828 + DDE_Tnp_1
CAZyme HRGMv2_2225_70 HRGMv2_2225_70_5 5108 8506 - CBM91 | GH43_10 | GH43_27
CAZyme HRGMv2_2225_70 HRGMv2_2225_70_6 8519 9994 - GH29
STP HRGMv2_2225_70 HRGMv2_2225_70_7 10184 11005 + AraC_binding | HTH_18
TF HRGMv2_2225_70 HRGMv2_2225_70_8 11108 11725 + LexA_DNA_bind
TC HRGMv2_2225_70 HRGMv2_2225_70_9 11860 12492 - 2.A.115.2.14
TC HRGMv2_2225_70 HRGMv2_2225_70_10 12543 13253 - 3.A.1.4.10
TC HRGMv2_2225_70 HRGMv2_2225_70_11 13291 14049 - 3.A.1.4.10
TC HRGMv2_2225_70 HRGMv2_2225_70_12 14053 15153 - 3.A.1.4.8
TC HRGMv2_2225_70 HRGMv2_2225_70_13 15170 16054 - 3.A.1.4.10
TC HRGMv2_2225_70 HRGMv2_2225_70_14 16179 17336 - 3.A.1.4.10
Gene ID: HRGMv2_2225_70_2
Type: TC
Location: 907 - 2748 (-)
Gene ID: HRGMv2_2225_70_3
Type: pfam
Location: 2795 - 3184 (-)
Gene ID: HRGMv2_2225_70_4
Type: pfam
Location: 3512 - 4828 (+)
Gene ID: HRGMv2_2225_70_5
Type: CAZyme
Location: 5108 - 8506 (-)
Gene ID: HRGMv2_2225_70_6
Type: CAZyme
Location: 8519 - 9994 (-)
Gene ID: HRGMv2_2225_70_7
Type: STP
Location: 10184 - 11005 (+)
Gene ID: HRGMv2_2225_70_8
Type: TF
Location: 11108 - 11725 (+)
Gene ID: HRGMv2_2225_70_9
Type: TC
Location: 11860 - 12492 (-)
Gene ID: HRGMv2_2225_70_10
Type: TC
Location: 12543 - 13253 (-)
Gene ID: HRGMv2_2225_70_11
Type: TC
Location: 13291 - 14049 (-)
Gene ID: HRGMv2_2225_70_12
Type: TC
Location: 14053 - 15153 (-)
Gene ID: HRGMv2_2225_70_13
Type: TC
Location: 15170 - 16054 (-)
Gene ID: HRGMv2_2225_70_14
Type: TC
Location: 16179 - 17336 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List