Cluster: HRGMv2_2225_CGC38
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2225
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2225_27 | HRGMv2_2225_27_22 | 26861 | 27766 | - | 3.A.1.1.39 |
| TC | HRGMv2_2225_27 | HRGMv2_2225_27_23 | 27766 | 28710 | - | 3.A.1.1.11 |
| STP | HRGMv2_2225_27 | HRGMv2_2225_27_24 | 28729 | 31725 | - | SBP_bac_1 |
| TC | HRGMv2_2225_27 | HRGMv2_2225_27_25 | 31759 | 32412 | - | 9.B.28.1.8 |
| CAZyme | HRGMv2_2225_27 | HRGMv2_2225_27_26 | 32429 | 33943 | - | CBM35 | GH26 |
Gene ID: HRGMv2_2225_27_22
Type: TC
Location: 26861 - 27766 (-)
Type: TC
Location: 26861 - 27766 (-)
Gene ID: HRGMv2_2225_27_23
Type: TC
Location: 27766 - 28710 (-)
Type: TC
Location: 27766 - 28710 (-)
Gene ID: HRGMv2_2225_27_24
Type: STP
Location: 28729 - 31725 (-)
Type: STP
Location: 28729 - 31725 (-)
Gene ID: HRGMv2_2225_27_25
Type: TC
Location: 31759 - 32412 (-)
Type: TC
Location: 31759 - 32412 (-)
Gene ID: HRGMv2_2225_27_26
Type: CAZyme
Location: 32429 - 33943 (-)
Type: CAZyme
Location: 32429 - 33943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934402315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2225_27_22 | vegetarian > omnivore | 1.31176 | 0.03783 |
| HRGMv2_2225_27_22 | vegetarian > vegan | 1.52587 | 0.01315 |