Cluster: HRGMv2_2225_CGC35
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2225
- CGC Family ID: CGCFAM_00046
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2225_22 | HRGMv2_2225_22_17 | 18526 | 20316 | - | 3.A.1.106.3 |
| TC | HRGMv2_2225_22 | HRGMv2_2225_22_18 | 20317 | 22041 | - | 3.A.1.106.3 |
| CAZyme | HRGMv2_2225_22 | HRGMv2_2225_22_19 | 22345 | 24864 | - | GT35 |
| pfam | HRGMv2_2225_22 | HRGMv2_2225_22_20 | 24888 | 28046 | - | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| pfam | HRGMv2_2225_22 | HRGMv2_2225_22_21 | 28332 | 29429 | - | Acyl_transf_3 | HGSNAT_cat |
| TC | HRGMv2_2225_22 | HRGMv2_2225_22_22 | 29574 | 30851 | + | 9.B.34.1.2 |
Gene ID: HRGMv2_2225_22_17
Type: TC
Location: 18526 - 20316 (-)
Type: TC
Location: 18526 - 20316 (-)
Gene ID: HRGMv2_2225_22_18
Type: TC
Location: 20317 - 22041 (-)
Type: TC
Location: 20317 - 22041 (-)
Gene ID: HRGMv2_2225_22_19
Type: CAZyme
Location: 22345 - 24864 (-)
Type: CAZyme
Location: 22345 - 24864 (-)
Gene ID: HRGMv2_2225_22_20
Type: pfam
Location: 24888 - 28046 (-)
Type: pfam
Location: 24888 - 28046 (-)
Gene ID: HRGMv2_2225_22_21
Type: pfam
Location: 28332 - 29429 (-)
Type: pfam
Location: 28332 - 29429 (-)
Gene ID: HRGMv2_2225_22_22
Type: TC
Location: 29574 - 30851 (+)
Type: TC
Location: 29574 - 30851 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934402315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.