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Cluster: HRGMv2_2225_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2225_14 HRGMv2_2225_14_19 18395 20440 + GH42
pfam HRGMv2_2225_14 HRGMv2_2225_14_20 20491 22209 + ABC_ATPase | ABC_N | MRB1590_C
TC HRGMv2_2225_14 HRGMv2_2225_14_21 22217 23611 + 2.A.66.1.32
pfam HRGMv2_2225_14 HRGMv2_2225_14_22 23625 24362 + PHP_C
TC HRGMv2_2225_14 HRGMv2_2225_14_23 24344 26119 - 3.A.1.135.5
TC HRGMv2_2225_14 HRGMv2_2225_14_24 26148 27947 - 3.A.1.106.8
TC HRGMv2_2225_14 HRGMv2_2225_14_25 27949 29505 - 3.A.1.120.6
pfam HRGMv2_2225_14 HRGMv2_2225_14_26 29759 30448 + DUF4358
TC HRGMv2_2225_14 HRGMv2_2225_14_27 30453 31856 + 2.A.50.2.1
Gene ID: HRGMv2_2225_14_19
Type: CAZyme
Location: 18395 - 20440 (+)
Gene ID: HRGMv2_2225_14_20
Type: pfam
Location: 20491 - 22209 (+)
Gene ID: HRGMv2_2225_14_21
Type: TC
Location: 22217 - 23611 (+)
Gene ID: HRGMv2_2225_14_22
Type: pfam
Location: 23625 - 24362 (+)
Gene ID: HRGMv2_2225_14_23
Type: TC
Location: 24344 - 26119 (-)
Gene ID: HRGMv2_2225_14_24
Type: TC
Location: 26148 - 27947 (-)
Gene ID: HRGMv2_2225_14_25
Type: TC
Location: 27949 - 29505 (-)
Gene ID: HRGMv2_2225_14_26
Type: pfam
Location: 29759 - 30448 (+)
Gene ID: HRGMv2_2225_14_27
Type: TC
Location: 30453 - 31856 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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