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Cluster: HRGMv2_2225_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2225_8 HRGMv2_2225_8_14 15845 19045 + GH25
pfam HRGMv2_2225_8 HRGMv2_2225_8_15 19135 20244 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
pfam HRGMv2_2225_8 HRGMv2_2225_8_16 20335 21204 + NTP_transferase | NTP_transf_3
CAZyme HRGMv2_2225_8 HRGMv2_2225_8_17 21194 22453 + GH25
pfam HRGMv2_2225_8 HRGMv2_2225_8_18 22477 23028 + dTDP_sugar_isom
TC HRGMv2_2225_8 HRGMv2_2225_8_19 23047 24033 + 3.A.1.104.1
pfam HRGMv2_2225_8 HRGMv2_2225_8_20 24066 25568 + DUF6056
TC HRGMv2_2225_8 HRGMv2_2225_8_21 25578 26909 + 3.A.1.103.6
pfam HRGMv2_2225_8 HRGMv2_2225_8_22 26899 28971 + PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25
CAZyme HRGMv2_2225_8 HRGMv2_2225_8_23 29000 30754 + GT2
TC HRGMv2_2225_8 HRGMv2_2225_8_24 30767 32230 + 2.A.50.2.1
NULL(UNKNOWN) HRGMv2_2225_8 HRGMv2_2225_8_25 32246 33310 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2225_8 HRGMv2_2225_8_26 33393 35114 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2225_8 HRGMv2_2225_8_27 35211 36551 + GT2
CAZyme HRGMv2_2225_8 HRGMv2_2225_8_28 36571 37548 + GT2
TC HRGMv2_2225_8 HRGMv2_2225_8_29 37619 39067 + 9.B.18.1.1
pfam HRGMv2_2225_8 HRGMv2_2225_8_30 39083 40261 + LytR_cpsA_psr
CAZyme HRGMv2_2225_8 HRGMv2_2225_8_31 40374 41294 + GT2
Gene ID: HRGMv2_2225_8_14
Type: CAZyme
Location: 15845 - 19045 (+)
Gene ID: HRGMv2_2225_8_15
Type: pfam
Location: 19135 - 20244 (+)
Gene ID: HRGMv2_2225_8_16
Type: pfam
Location: 20335 - 21204 (+)
Gene ID: HRGMv2_2225_8_17
Type: CAZyme
Location: 21194 - 22453 (+)
Gene ID: HRGMv2_2225_8_18
Type: pfam
Location: 22477 - 23028 (+)
Gene ID: HRGMv2_2225_8_19
Type: TC
Location: 23047 - 24033 (+)
Gene ID: HRGMv2_2225_8_20
Type: pfam
Location: 24066 - 25568 (+)
Gene ID: HRGMv2_2225_8_21
Type: TC
Location: 25578 - 26909 (+)
Gene ID: HRGMv2_2225_8_22
Type: pfam
Location: 26899 - 28971 (+)
Gene ID: HRGMv2_2225_8_23
Type: CAZyme
Location: 29000 - 30754 (+)
Gene ID: HRGMv2_2225_8_24
Type: TC
Location: 30767 - 32230 (+)
Gene ID: HRGMv2_2225_8_25
Type:
Location: 32246 - 33310 (+)
Gene ID: HRGMv2_2225_8_26
Type: pfam
Location: 33393 - 35114 (+)
Gene ID: HRGMv2_2225_8_27
Type: CAZyme
Location: 35211 - 36551 (+)
Gene ID: HRGMv2_2225_8_28
Type: CAZyme
Location: 36571 - 37548 (+)
Gene ID: HRGMv2_2225_8_29
Type: TC
Location: 37619 - 39067 (+)
Gene ID: HRGMv2_2225_8_30
Type: pfam
Location: 39083 - 40261 (+)
Gene ID: HRGMv2_2225_8_31
Type: CAZyme
Location: 40374 - 41294 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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