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Cluster: HRGMv2_2215_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2215_3 HRGMv2_2215_3_6 3970 6600 + GH2
NULL(UNKNOWN) HRGMv2_2215_3 HRGMv2_2215_3_7 6983 8446 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2215_3 HRGMv2_2215_3_8 8621 9517 + 3.A.1.1.46
TC HRGMv2_2215_3 HRGMv2_2215_3_9 9519 10415 + 3.A.1.1.41
TF HRGMv2_2215_3 HRGMv2_2215_3_10 10481 11335 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2215_3 HRGMv2_2215_3_11 11551 14064 + GH31_2
TC HRGMv2_2215_3 HRGMv2_2215_3_12 14097 15149 + 2.A.56.1.1
TC HRGMv2_2215_3 HRGMv2_2215_3_13 15142 15681 + 2.A.56.1.5
TC HRGMv2_2215_3 HRGMv2_2215_3_14 15678 16982 + 2.A.56.1.5
Gene ID: HRGMv2_2215_3_6
Type: CAZyme
Location: 3970 - 6600 (+)
Gene ID: HRGMv2_2215_3_7
Type:
Location: 6983 - 8446 (+)
Gene ID: HRGMv2_2215_3_8
Type: TC
Location: 8621 - 9517 (+)
Gene ID: HRGMv2_2215_3_9
Type: TC
Location: 9519 - 10415 (+)
Gene ID: HRGMv2_2215_3_10
Type: TF
Location: 10481 - 11335 (-)
Gene ID: HRGMv2_2215_3_11
Type: CAZyme
Location: 11551 - 14064 (+)
Gene ID: HRGMv2_2215_3_12
Type: TC
Location: 14097 - 15149 (+)
Gene ID: HRGMv2_2215_3_13
Type: TC
Location: 15142 - 15681 (+)
Gene ID: HRGMv2_2215_3_14
Type: TC
Location: 15678 - 16982 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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