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Cluster: HRGMv2_2215_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2215_2 HRGMv2_2215_2_46 53470 54741 - GT4
CAZyme HRGMv2_2215_2 HRGMv2_2215_2_47 54744 55868 - GT4
CAZyme HRGMv2_2215_2 HRGMv2_2215_2_48 55865 57025 - GT4
pfam HRGMv2_2215_2 HRGMv2_2215_2_49 57022 58035 - ATP-grasp_3 | ATPgrasp_Ter | PylC-like_N
STP HRGMv2_2215_2 HRGMv2_2215_2_50 58081 59085 - PALP
TC HRGMv2_2215_2 HRGMv2_2215_2_51 59072 59764 - 9.B.18.1.2
pfam HRGMv2_2215_2 HRGMv2_2215_2_52 59818 61101 - DegT_DnrJ_EryC1
TC HRGMv2_2215_2 HRGMv2_2215_2_53 61151 63181 - 9.B.18.2.1
pfam HRGMv2_2215_2 HRGMv2_2215_2_54 63231 64937 - DUF6020
NULL(UNKNOWN) HRGMv2_2215_2 HRGMv2_2215_2_55 64959 67613 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2215_2 HRGMv2_2215_2_56 67616 68560 - GT2
Gene ID: HRGMv2_2215_2_46
Type: CAZyme
Location: 53470 - 54741 (-)
Gene ID: HRGMv2_2215_2_47
Type: CAZyme
Location: 54744 - 55868 (-)
Gene ID: HRGMv2_2215_2_48
Type: CAZyme
Location: 55865 - 57025 (-)
Gene ID: HRGMv2_2215_2_49
Type: pfam
Location: 57022 - 58035 (-)
Gene ID: HRGMv2_2215_2_50
Type: STP
Location: 58081 - 59085 (-)
Gene ID: HRGMv2_2215_2_51
Type: TC
Location: 59072 - 59764 (-)
Gene ID: HRGMv2_2215_2_52
Type: pfam
Location: 59818 - 61101 (-)
Gene ID: HRGMv2_2215_2_53
Type: TC
Location: 61151 - 63181 (-)
Gene ID: HRGMv2_2215_2_54
Type: pfam
Location: 63231 - 64937 (-)
Gene ID: HRGMv2_2215_2_55
Type:
Location: 64959 - 67613 (-)
Gene ID: HRGMv2_2215_2_56
Type: CAZyme
Location: 67616 - 68560 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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