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Cluster: HRGMv2_2215_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2215_52 HRGMv2_2215_52_3 1029 2195 + GH177
pfam HRGMv2_2215_52 HRGMv2_2215_52_4 2224 4359 + UvrD-helicase | AAA_19 | UvrD_C | UvrD_C
pfam HRGMv2_2215_52 HRGMv2_2215_52_5 4364 5020 + RNase_T
TC HRGMv2_2215_52 HRGMv2_2215_52_6 5044 6390 + 2.A.66.1.28
pfam HRGMv2_2215_52 HRGMv2_2215_52_7 6404 7336 - ApbA | ApbA_C
pfam HRGMv2_2215_52 HRGMv2_2215_52_8 7600 8550 + Ldh_1_N | Ldh_1_C | F420_oxidored
TC HRGMv2_2215_52 HRGMv2_2215_52_9 8695 9084 + 1.E.14.1.1
TC HRGMv2_2215_52 HRGMv2_2215_52_10 9081 9788 + 2.A.122.1.4
Gene ID: HRGMv2_2215_52_3
Type: CAZyme
Location: 1029 - 2195 (+)
Gene ID: HRGMv2_2215_52_4
Type: pfam
Location: 2224 - 4359 (+)
Gene ID: HRGMv2_2215_52_5
Type: pfam
Location: 4364 - 5020 (+)
Gene ID: HRGMv2_2215_52_6
Type: TC
Location: 5044 - 6390 (+)
Gene ID: HRGMv2_2215_52_7
Type: pfam
Location: 6404 - 7336 (-)
Gene ID: HRGMv2_2215_52_8
Type: pfam
Location: 7600 - 8550 (+)
Gene ID: HRGMv2_2215_52_9
Type: TC
Location: 8695 - 9084 (+)
Gene ID: HRGMv2_2215_52_10
Type: TC
Location: 9081 - 9788 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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