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Cluster: HRGMv2_2215_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2215_29 HRGMv2_2215_29_5 3641 4540 - 3.A.1.1.29
TC HRGMv2_2215_29 HRGMv2_2215_29_6 4564 5514 - 3.A.1.1.10
CAZyme HRGMv2_2215_29 HRGMv2_2215_29_7 5821 7896 - GH67
TF HRGMv2_2215_29 HRGMv2_2215_29_8 8093 9025 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2215_29 HRGMv2_2215_29_9 9031 12456 - GH2
CAZyme HRGMv2_2215_29 HRGMv2_2215_29_10 12532 14556 - CE20 | CE20
CAZyme HRGMv2_2215_29 HRGMv2_2215_29_11 14631 16292 - CBM91 | GH43_12
CAZyme HRGMv2_2215_29 HRGMv2_2215_29_12 16398 19472 - GH115
Gene ID: HRGMv2_2215_29_5
Type: TC
Location: 3641 - 4540 (-)
Gene ID: HRGMv2_2215_29_6
Type: TC
Location: 4564 - 5514 (-)
Gene ID: HRGMv2_2215_29_7
Type: CAZyme
Location: 5821 - 7896 (-)
Gene ID: HRGMv2_2215_29_8
Type: TF
Location: 8093 - 9025 (+)
Gene ID: HRGMv2_2215_29_9
Type: CAZyme
Location: 9031 - 12456 (-)
Gene ID: HRGMv2_2215_29_10
Type: CAZyme
Location: 12532 - 14556 (-)
Gene ID: HRGMv2_2215_29_11
Type: CAZyme
Location: 14631 - 16292 (-)
Gene ID: HRGMv2_2215_29_12
Type: CAZyme
Location: 16398 - 19472 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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