Cluster: HRGMv2_2215_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2215
- CGC Family ID: CGCFAM_00390
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2215_22 | HRGMv2_2215_22_4 | 1776 | 2021 | + | 3.D.1.6.4 |
| pfam | HRGMv2_2215_22 | HRGMv2_2215_22_5 | 2038 | 2745 | + | dsrm | Ribonuclease_3 | Ribonucleas_3_3 |
| pfam | HRGMv2_2215_22 | HRGMv2_2215_22_6 | 2779 | 6342 | + | SMC_N | SMC_hinge | AAA_15 | AAA_23 |
| TC | HRGMv2_2215_22 | HRGMv2_2215_22_7 | 6382 | 7470 | + | 3.A.5.1.1 |
| CAZyme | HRGMv2_2215_22 | HRGMv2_2215_22_8 | 7510 | 8658 | + | GH25 |
| STP | HRGMv2_2215_22 | HRGMv2_2215_22_9 | 8805 | 9140 | + | Sigma70_r4 |
| TC | HRGMv2_2215_22 | HRGMv2_2215_22_10 | 9179 | 10585 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_2215_22_4
Type: TC
Location: 1776 - 2021 (+)
Type: TC
Location: 1776 - 2021 (+)
Gene ID: HRGMv2_2215_22_5
Type: pfam
Location: 2038 - 2745 (+)
Type: pfam
Location: 2038 - 2745 (+)
Gene ID: HRGMv2_2215_22_6
Type: pfam
Location: 2779 - 6342 (+)
Type: pfam
Location: 2779 - 6342 (+)
Gene ID: HRGMv2_2215_22_7
Type: TC
Location: 6382 - 7470 (+)
Type: TC
Location: 6382 - 7470 (+)
Gene ID: HRGMv2_2215_22_8
Type: CAZyme
Location: 7510 - 8658 (+)
Type: CAZyme
Location: 7510 - 8658 (+)
Gene ID: HRGMv2_2215_22_9
Type: STP
Location: 8805 - 9140 (+)
Type: STP
Location: 8805 - 9140 (+)
Gene ID: HRGMv2_2215_22_10
Type: TC
Location: 9179 - 10585 (+)
Type: TC
Location: 9179 - 10585 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-791
Species
CAG-791 sp000431495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.