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Cluster: HRGMv2_2215_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2215_12 HRGMv2_2215_12_19 20084 21730 + 3.A.1.5.27
TC HRGMv2_2215_12 HRGMv2_2215_12_20 21825 22766 + 3.A.1.5.20
TC HRGMv2_2215_12 HRGMv2_2215_12_21 22777 23625 + 3.A.1.5.38
TC HRGMv2_2215_12 HRGMv2_2215_12_22 23637 24653 + 3.A.1.5.15
TC HRGMv2_2215_12 HRGMv2_2215_12_23 24640 25644 + 3.A.1.5.20
peptidase HRGMv2_2215_12 HRGMv2_2215_12_24 25704 26642 + S66.UPW
TC HRGMv2_2215_12 HRGMv2_2215_12_25 26981 27880 + 3.A.1.1.28
TC HRGMv2_2215_12 HRGMv2_2215_12_26 27901 28734 + 3.A.1.1.28
pfam HRGMv2_2215_12 HRGMv2_2215_12_27 28772 29590 + Lactamase_B_2
TC HRGMv2_2215_12 HRGMv2_2215_12_28 29647 31014 + 3.A.1.1.28
CAZyme HRGMv2_2215_12 HRGMv2_2215_12_29 31186 32730 + GH13_44
TC HRGMv2_2215_12 HRGMv2_2215_12_30 32803 33528 + 9.B.20.1.4
TC HRGMv2_2215_12 HRGMv2_2215_12_31 33540 34235 + 9.B.20.1.4
Gene ID: HRGMv2_2215_12_19
Type: TC
Location: 20084 - 21730 (+)
Gene ID: HRGMv2_2215_12_20
Type: TC
Location: 21825 - 22766 (+)
Gene ID: HRGMv2_2215_12_21
Type: TC
Location: 22777 - 23625 (+)
Gene ID: HRGMv2_2215_12_22
Type: TC
Location: 23637 - 24653 (+)
Gene ID: HRGMv2_2215_12_23
Type: TC
Location: 24640 - 25644 (+)
Gene ID: HRGMv2_2215_12_24
Type: peptidase
Location: 25704 - 26642 (+)
Gene ID: HRGMv2_2215_12_25
Type: TC
Location: 26981 - 27880 (+)
Gene ID: HRGMv2_2215_12_26
Type: TC
Location: 27901 - 28734 (+)
Gene ID: HRGMv2_2215_12_27
Type: pfam
Location: 28772 - 29590 (+)
Gene ID: HRGMv2_2215_12_28
Type: TC
Location: 29647 - 31014 (+)
Gene ID: HRGMv2_2215_12_29
Type: CAZyme
Location: 31186 - 32730 (+)
Gene ID: HRGMv2_2215_12_30
Type: TC
Location: 32803 - 33528 (+)
Gene ID: HRGMv2_2215_12_31
Type: TC
Location: 33540 - 34235 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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