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Cluster: HRGMv2_2215_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2215_9 HRGMv2_2215_9_15 15867 16448 + 3.A.1.102.1
STP HRGMv2_2215_9 HRGMv2_2215_9_16 16467 17942 + Fer4 | Fer4
TF HRGMv2_2215_9 HRGMv2_2215_9_17 18106 18846 - HTH_AraC | HTH_AraC
TC HRGMv2_2215_9 HRGMv2_2215_9_18 18834 20717 - 8.A.59.2.1
TC HRGMv2_2215_9 HRGMv2_2215_9_19 20849 21736 + 3.A.1.1.42
TC HRGMv2_2215_9 HRGMv2_2215_9_20 21736 22575 + 3.A.1.1.45
STP HRGMv2_2215_9 HRGMv2_2215_9_21 22658 24052 + SBP_bac_1
CAZyme HRGMv2_2215_9 HRGMv2_2215_9_22 24180 26528 + GH31_3
Gene ID: HRGMv2_2215_9_15
Type: TC
Location: 15867 - 16448 (+)
Gene ID: HRGMv2_2215_9_16
Type: STP
Location: 16467 - 17942 (+)
Gene ID: HRGMv2_2215_9_17
Type: TF
Location: 18106 - 18846 (-)
Gene ID: HRGMv2_2215_9_18
Type: TC
Location: 18834 - 20717 (-)
Gene ID: HRGMv2_2215_9_19
Type: TC
Location: 20849 - 21736 (+)
Gene ID: HRGMv2_2215_9_20
Type: TC
Location: 21736 - 22575 (+)
Gene ID: HRGMv2_2215_9_21
Type: STP
Location: 22658 - 24052 (+)
Gene ID: HRGMv2_2215_9_22
Type: CAZyme
Location: 24180 - 26528 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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