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Cluster: HRGMv2_2215_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2215_8 HRGMv2_2215_8_25 27010 28005 + 3.A.1.104.1
TC HRGMv2_2215_8 HRGMv2_2215_8_26 28053 29336 + 3.A.1.103.1
pfam HRGMv2_2215_8 HRGMv2_2215_8_27 29379 31589 + Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25
CAZyme HRGMv2_2215_8 HRGMv2_2215_8_28 31603 33705 + GT2
CAZyme HRGMv2_2215_8 HRGMv2_2215_8_29 33722 35746 + GT2 | GT2
pfam HRGMv2_2215_8 HRGMv2_2215_8_30 35785 37512 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2215_8 HRGMv2_2215_8_31 37538 38848 + GT2
CAZyme HRGMv2_2215_8 HRGMv2_2215_8_32 38894 39982 + GT2
TC HRGMv2_2215_8 HRGMv2_2215_8_33 39999 41423 + 9.B.18.1.1
pfam HRGMv2_2215_8 HRGMv2_2215_8_34 41558 43006 + LytR_cpsA_psr
CAZyme HRGMv2_2215_8 HRGMv2_2215_8_35 43269 44273 + GT2
Gene ID: HRGMv2_2215_8_25
Type: TC
Location: 27010 - 28005 (+)
Gene ID: HRGMv2_2215_8_26
Type: TC
Location: 28053 - 29336 (+)
Gene ID: HRGMv2_2215_8_27
Type: pfam
Location: 29379 - 31589 (+)
Gene ID: HRGMv2_2215_8_28
Type: CAZyme
Location: 31603 - 33705 (+)
Gene ID: HRGMv2_2215_8_29
Type: CAZyme
Location: 33722 - 35746 (+)
Gene ID: HRGMv2_2215_8_30
Type: pfam
Location: 35785 - 37512 (+)
Gene ID: HRGMv2_2215_8_31
Type: CAZyme
Location: 37538 - 38848 (+)
Gene ID: HRGMv2_2215_8_32
Type: CAZyme
Location: 38894 - 39982 (+)
Gene ID: HRGMv2_2215_8_33
Type: TC
Location: 39999 - 41423 (+)
Gene ID: HRGMv2_2215_8_34
Type: pfam
Location: 41558 - 43006 (+)
Gene ID: HRGMv2_2215_8_35
Type: CAZyme
Location: 43269 - 44273 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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