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Cluster: HRGMv2_2215_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2215_1 HRGMv2_2215_1_59 59832 61235 + 3.A.1.1.27
TC HRGMv2_2215_1 HRGMv2_2215_1_60 61235 62116 + 3.A.1.1.27
TF HRGMv2_2215_1 HRGMv2_2215_1_61 62123 63118 + LacI
CAZyme HRGMv2_2215_1 HRGMv2_2215_1_62 63182 65332 + GH35
pfam HRGMv2_2215_1 HRGMv2_2215_1_63 65461 66714 + GlcNAc_2-epim
NULL(UNKNOWN) HRGMv2_2215_1 HRGMv2_2215_1_64 67052 68344 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2215_1 HRGMv2_2215_1_65 68468 69076 + 2.A.107.1.2
TC HRGMv2_2215_1 HRGMv2_2215_1_66 69098 70246 + 3.A.1.1.38
TC HRGMv2_2215_1 HRGMv2_2215_1_67 70243 71139 + 3.A.1.1.3
TC HRGMv2_2215_1 HRGMv2_2215_1_68 71136 72002 + 3.A.1.1.20
Gene ID: HRGMv2_2215_1_59
Type: TC
Location: 59832 - 61235 (+)
Gene ID: HRGMv2_2215_1_60
Type: TC
Location: 61235 - 62116 (+)
Gene ID: HRGMv2_2215_1_61
Type: TF
Location: 62123 - 63118 (+)
Gene ID: HRGMv2_2215_1_62
Type: CAZyme
Location: 63182 - 65332 (+)
Gene ID: HRGMv2_2215_1_63
Type: pfam
Location: 65461 - 66714 (+)
Gene ID: HRGMv2_2215_1_64
Type:
Location: 67052 - 68344 (+)
Gene ID: HRGMv2_2215_1_65
Type: TC
Location: 68468 - 69076 (+)
Gene ID: HRGMv2_2215_1_66
Type: TC
Location: 69098 - 70246 (+)
Gene ID: HRGMv2_2215_1_67
Type: TC
Location: 70243 - 71139 (+)
Gene ID: HRGMv2_2215_1_68
Type: TC
Location: 71136 - 72002 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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