Cluster: HRGMv2_2213_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2213
- CGC Family ID: CGCFAM_04047
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2213_9 | HRGMv2_2213_9_24 | 27666 | 28751 | - | 3.A.1.17.6 |
| TC | HRGMv2_2213_9 | HRGMv2_2213_9_25 | 28748 | 29491 | - | 3.A.1.17.6 |
| TC | HRGMv2_2213_9 | HRGMv2_2213_9_26 | 29493 | 30242 | - | 3.A.1.17.8 |
| pfam | HRGMv2_2213_9 | HRGMv2_2213_9_27 | 30245 | 30904 | - | TENA_THI-4 |
| CAZyme | HRGMv2_2213_9 | HRGMv2_2213_9_28 | 31085 | 32059 | - | GT2 |
| TC | HRGMv2_2213_9 | HRGMv2_2213_9_29 | 32157 | 32846 | + | 9.B.120.1.3 |
Gene ID: HRGMv2_2213_9_24
Type: TC
Location: 27666 - 28751 (-)
Type: TC
Location: 27666 - 28751 (-)
Gene ID: HRGMv2_2213_9_25
Type: TC
Location: 28748 - 29491 (-)
Type: TC
Location: 28748 - 29491 (-)
Gene ID: HRGMv2_2213_9_26
Type: TC
Location: 29493 - 30242 (-)
Type: TC
Location: 29493 - 30242 (-)
Gene ID: HRGMv2_2213_9_27
Type: pfam
Location: 30245 - 30904 (-)
Type: pfam
Location: 30245 - 30904 (-)
Gene ID: HRGMv2_2213_9_28
Type: CAZyme
Location: 31085 - 32059 (-)
Type: CAZyme
Location: 31085 - 32059 (-)
Gene ID: HRGMv2_2213_9_29
Type: TC
Location: 32157 - 32846 (+)
Type: TC
Location: 32157 - 32846 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp958405355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.