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Cluster: HRGMv2_2213_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2213_4 HRGMv2_2213_4_23 19145 20059 + 3.A.1.131.1
pfam HRGMv2_2213_4 HRGMv2_2213_4_24 20052 20876 + ABC2_membrane_2
STP HRGMv2_2213_4 HRGMv2_2213_4_25 20887 21780 + HATPase_c | HisKA
CAZyme HRGMv2_2213_4 HRGMv2_2213_4_26 21861 24356 - GT35
pfam HRGMv2_2213_4 HRGMv2_2213_4_27 24384 27536 - tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915
pfam HRGMv2_2213_4 HRGMv2_2213_4_28 27984 29219 + Biotin_lipoyl_2
TC HRGMv2_2213_4 HRGMv2_2213_4_29 29216 29923 + 3.A.1.122.2
NULL(UNKNOWN) HRGMv2_2213_4 HRGMv2_2213_4_30 29895 31472 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2213_4 HRGMv2_2213_4_31 31487 32740 + 3.A.1.122.2
TC HRGMv2_2213_4 HRGMv2_2213_4_32 33228 34619 - 2.A.22.5.3
TF HRGMv2_2213_4 HRGMv2_2213_4_33 34831 35553 + HTH_3
CAZyme HRGMv2_2213_4 HRGMv2_2213_4_34 35550 37259 - GH18
Gene ID: HRGMv2_2213_4_23
Type: TC
Location: 19145 - 20059 (+)
Gene ID: HRGMv2_2213_4_24
Type: pfam
Location: 20052 - 20876 (+)
Gene ID: HRGMv2_2213_4_25
Type: STP
Location: 20887 - 21780 (+)
Gene ID: HRGMv2_2213_4_26
Type: CAZyme
Location: 21861 - 24356 (-)
Gene ID: HRGMv2_2213_4_27
Type: pfam
Location: 24384 - 27536 (-)
Gene ID: HRGMv2_2213_4_28
Type: pfam
Location: 27984 - 29219 (+)
Gene ID: HRGMv2_2213_4_29
Type: TC
Location: 29216 - 29923 (+)
Gene ID: HRGMv2_2213_4_30
Type:
Location: 29895 - 31472 (+)
Gene ID: HRGMv2_2213_4_31
Type: TC
Location: 31487 - 32740 (+)
Gene ID: HRGMv2_2213_4_32
Type: TC
Location: 33228 - 34619 (-)
Gene ID: HRGMv2_2213_4_33
Type: TF
Location: 34831 - 35553 (+)
Gene ID: HRGMv2_2213_4_34
Type: CAZyme
Location: 35550 - 37259 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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