Cluster: HRGMv2_2213_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2213
- CGC Family ID: CGCFAM_02615
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2213_2 | HRGMv2_2213_2_112 | 114915 | 115400 | - | 2.A.115.2.14 |
| CAZyme | HRGMv2_2213_2 | HRGMv2_2213_2_113 | 115561 | 116385 | + | CE4 |
| TC | HRGMv2_2213_2 | HRGMv2_2213_2_114 | 116492 | 117637 | - | 2.A.1.2.90 |
| TC | HRGMv2_2213_2 | HRGMv2_2213_2_115 | 117741 | 119795 | - | 3.A.1.134.9 |
| TC | HRGMv2_2213_2 | HRGMv2_2213_2_116 | 119792 | 120556 | - | 3.A.1.134.4 |
Gene ID: HRGMv2_2213_2_112
Type: TC
Location: 114915 - 115400 (-)
Type: TC
Location: 114915 - 115400 (-)
Gene ID: HRGMv2_2213_2_113
Type: CAZyme
Location: 115561 - 116385 (+)
Type: CAZyme
Location: 115561 - 116385 (+)
Gene ID: HRGMv2_2213_2_114
Type: TC
Location: 116492 - 117637 (-)
Type: TC
Location: 116492 - 117637 (-)
Gene ID: HRGMv2_2213_2_115
Type: TC
Location: 117741 - 119795 (-)
Type: TC
Location: 117741 - 119795 (-)
Gene ID: HRGMv2_2213_2_116
Type: TC
Location: 119792 - 120556 (-)
Type: TC
Location: 119792 - 120556 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp958405355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.