Cluster: HRGMv2_2213_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2213
- CGC Family ID: CGCFAM_00092
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2213_59 | HRGMv2_2213_59_4 | 3922 | 4806 | + | 3.A.1.1.20 |
| TC | HRGMv2_2213_59 | HRGMv2_2213_59_5 | 4819 | 5709 | + | 3.A.1.1.25 |
| pfam | HRGMv2_2213_59 | HRGMv2_2213_59_6 | 5719 | 5919 | + | DUF6903 |
| CAZyme | HRGMv2_2213_59 | HRGMv2_2213_59_7 | 5940 | 8123 | + | GH112 |
| TC | HRGMv2_2213_59 | HRGMv2_2213_59_8 | 8123 | 9295 | + | 3.A.1.1.26 |
Gene ID: HRGMv2_2213_59_4
Type: TC
Location: 3922 - 4806 (+)
Type: TC
Location: 3922 - 4806 (+)
Gene ID: HRGMv2_2213_59_5
Type: TC
Location: 4819 - 5709 (+)
Type: TC
Location: 4819 - 5709 (+)
Gene ID: HRGMv2_2213_59_6
Type: pfam
Location: 5719 - 5919 (+)
Type: pfam
Location: 5719 - 5919 (+)
Gene ID: HRGMv2_2213_59_7
Type: CAZyme
Location: 5940 - 8123 (+)
Type: CAZyme
Location: 5940 - 8123 (+)
Gene ID: HRGMv2_2213_59_8
Type: TC
Location: 8123 - 9295 (+)
Type: TC
Location: 8123 - 9295 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp958405355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.