Cluster: HRGMv2_2213_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2213
- CGC Family ID: CGCFAM_00550
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2213_28 | HRGMv2_2213_28_6 | 5667 | 7457 | + | 2.A.58.2.2 |
| pfam | HRGMv2_2213_28 | HRGMv2_2213_28_7 | 7522 | 8490 | - | ABC_sub_bind |
| pfam | HRGMv2_2213_28 | HRGMv2_2213_28_8 | 8795 | 9619 | + | CN_hydrolase |
| TC | HRGMv2_2213_28 | HRGMv2_2213_28_9 | 9632 | 10669 | - | 4.D.2.1.5 |
| CAZyme | HRGMv2_2213_28 | HRGMv2_2213_28_10 | 10629 | 11273 | - | CE4 |
| CAZyme | HRGMv2_2213_28 | HRGMv2_2213_28_11 | 11248 | 12432 | - | GT28 |
Gene ID: HRGMv2_2213_28_6
Type: TC
Location: 5667 - 7457 (+)
Type: TC
Location: 5667 - 7457 (+)
Gene ID: HRGMv2_2213_28_7
Type: pfam
Location: 7522 - 8490 (-)
Type: pfam
Location: 7522 - 8490 (-)
Gene ID: HRGMv2_2213_28_8
Type: pfam
Location: 8795 - 9619 (+)
Type: pfam
Location: 8795 - 9619 (+)
Gene ID: HRGMv2_2213_28_9
Type: TC
Location: 9632 - 10669 (-)
Type: TC
Location: 9632 - 10669 (-)
Gene ID: HRGMv2_2213_28_10
Type: CAZyme
Location: 10629 - 11273 (-)
Type: CAZyme
Location: 10629 - 11273 (-)
Gene ID: HRGMv2_2213_28_11
Type: CAZyme
Location: 11248 - 12432 (-)
Type: CAZyme
Location: 11248 - 12432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp958405355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.