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Cluster: HRGMv2_2213_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2213_15 HRGMv2_2213_15_11 15477 16547 - 9.A.23.1.1
TF HRGMv2_2213_15 HRGMv2_2213_15_12 16562 17083 - HTH_11
NULL(UNKNOWN) HRGMv2_2213_15 HRGMv2_2213_15_13 17234 17503 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2213_15 HRGMv2_2213_15_14 17507 18430 + 2.A.19.5.2
CAZyme HRGMv2_2213_15 HRGMv2_2213_15_15 18495 19202 + CE4
TC HRGMv2_2213_15 HRGMv2_2213_15_16 19204 20643 - 2.A.38.1.1
TC HRGMv2_2213_15 HRGMv2_2213_15_17 20646 22025 - 2.A.38.1.1
pfam HRGMv2_2213_15 HRGMv2_2213_15_18 22047 22877 - PNP_UDP_1
STP HRGMv2_2213_15 HRGMv2_2213_15_19 22959 24251 - ACT
TC HRGMv2_2213_15 HRGMv2_2213_15_20 24352 25038 - 9.B.120.1.3
Gene ID: HRGMv2_2213_15_11
Type: TC
Location: 15477 - 16547 (-)
Gene ID: HRGMv2_2213_15_12
Type: TF
Location: 16562 - 17083 (-)
Gene ID: HRGMv2_2213_15_13
Type:
Location: 17234 - 17503 (+)
Gene ID: HRGMv2_2213_15_14
Type: TC
Location: 17507 - 18430 (+)
Gene ID: HRGMv2_2213_15_15
Type: CAZyme
Location: 18495 - 19202 (+)
Gene ID: HRGMv2_2213_15_16
Type: TC
Location: 19204 - 20643 (-)
Gene ID: HRGMv2_2213_15_17
Type: TC
Location: 20646 - 22025 (-)
Gene ID: HRGMv2_2213_15_18
Type: pfam
Location: 22047 - 22877 (-)
Gene ID: HRGMv2_2213_15_19
Type: STP
Location: 22959 - 24251 (-)
Gene ID: HRGMv2_2213_15_20
Type: TC
Location: 24352 - 25038 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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