Cluster: HRGMv2_2213_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2213
- CGC Family ID: CGCFAM_00642
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2213_15 | HRGMv2_2213_15_1 | 2 | 472 | - | 3.A.7.15.1 |
| NULL(UNKNOWN) | HRGMv2_2213_15 | HRGMv2_2213_15_2 | 485 | 1378 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2213_15 | HRGMv2_2213_15_3 | 1628 | 1903 | - | BofA |
| CAZyme | HRGMv2_2213_15 | HRGMv2_2213_15_4 | 1954 | 3954 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_2213_15 | HRGMv2_2213_15_5 | 3965 | 5308 | - | GH13_20 |
Gene ID: HRGMv2_2213_15_1
Type: TC
Location: 2 - 472 (-)
Type: TC
Location: 2 - 472 (-)
Gene ID: HRGMv2_2213_15_2
Type:
Location: 485 - 1378 (-)
Type:
Location: 485 - 1378 (-)
Gene ID: HRGMv2_2213_15_3
Type: pfam
Location: 1628 - 1903 (-)
Type: pfam
Location: 1628 - 1903 (-)
Gene ID: HRGMv2_2213_15_4
Type: CAZyme
Location: 1954 - 3954 (-)
Type: CAZyme
Location: 1954 - 3954 (-)
Gene ID: HRGMv2_2213_15_5
Type: CAZyme
Location: 3965 - 5308 (-)
Type: CAZyme
Location: 3965 - 5308 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp958405355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.