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Cluster: HRGMv2_2213_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2213_11 HRGMv2_2213_11_15 10291 11367 + 3.A.1.11.8
TC HRGMv2_2213_11 HRGMv2_2213_11_16 11339 12178 + 3.A.1.11.8
TC HRGMv2_2213_11 HRGMv2_2213_11_17 12172 12954 + 3.A.1.11.2
TC HRGMv2_2213_11 HRGMv2_2213_11_18 12968 14035 + 3.A.1.11.7
TC HRGMv2_2213_11 HRGMv2_2213_11_19 14135 14740 + 3.A.1.12.8
pfam HRGMv2_2213_11 HRGMv2_2213_11_20 14781 15776 + OpuAC
TC HRGMv2_2213_11 HRGMv2_2213_11_21 15792 16520 + 3.A.1.12.3
pfam HRGMv2_2213_11 HRGMv2_2213_11_22 16576 17817 - DUF1015
CAZyme HRGMv2_2213_11 HRGMv2_2213_11_23 18051 19313 + GT2
Gene ID: HRGMv2_2213_11_15
Type: TC
Location: 10291 - 11367 (+)
Gene ID: HRGMv2_2213_11_16
Type: TC
Location: 11339 - 12178 (+)
Gene ID: HRGMv2_2213_11_17
Type: TC
Location: 12172 - 12954 (+)
Gene ID: HRGMv2_2213_11_18
Type: TC
Location: 12968 - 14035 (+)
Gene ID: HRGMv2_2213_11_19
Type: TC
Location: 14135 - 14740 (+)
Gene ID: HRGMv2_2213_11_20
Type: pfam
Location: 14781 - 15776 (+)
Gene ID: HRGMv2_2213_11_21
Type: TC
Location: 15792 - 16520 (+)
Gene ID: HRGMv2_2213_11_22
Type: pfam
Location: 16576 - 17817 (-)
Gene ID: HRGMv2_2213_11_23
Type: CAZyme
Location: 18051 - 19313 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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