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Cluster: HRGMv2_2212_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2212_11 HRGMv2_2212_11_46 42627 43103 + 3.D.1.5.1
TC HRGMv2_2212_11 HRGMv2_2212_11_47 43107 44993 + 3.D.1.5.1
STP HRGMv2_2212_11 HRGMv2_2212_11_48 45006 46694 + Fer4
CAZyme HRGMv2_2212_11 HRGMv2_2212_11_49 46985 48952 + GT5
TC HRGMv2_2212_11 HRGMv2_2212_11_50 50040 50906 + 3.A.1.3.15
TC HRGMv2_2212_11 HRGMv2_2212_11_51 51106 51750 + 3.A.1.3.14
TC HRGMv2_2212_11 HRGMv2_2212_11_52 51763 52548 + 3.A.1.3.14
Gene ID: HRGMv2_2212_11_46
Type: TC
Location: 42627 - 43103 (+)
Gene ID: HRGMv2_2212_11_47
Type: TC
Location: 43107 - 44993 (+)
Gene ID: HRGMv2_2212_11_48
Type: STP
Location: 45006 - 46694 (+)
Gene ID: HRGMv2_2212_11_49
Type: CAZyme
Location: 46985 - 48952 (+)
Gene ID: HRGMv2_2212_11_50
Type: TC
Location: 50040 - 50906 (+)
Gene ID: HRGMv2_2212_11_51
Type: TC
Location: 51106 - 51750 (+)
Gene ID: HRGMv2_2212_11_52
Type: TC
Location: 51763 - 52548 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2212_11_49 vegan > omnivore 1.09968 0.00782
HRGMv2_2212_11_52 vegan > omnivore 1.99468 0.00782

🧭 Explore Read Mapping of CGC

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