Cluster: HRGMv2_2212_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2212
- CGC Family ID: CGCFAM_07516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2212_3 | HRGMv2_2212_3_69 | 76554 | 78095 | - | 2.A.25.1.5 |
| CAZyme | HRGMv2_2212_3 | HRGMv2_2212_3_70 | 78136 | 78966 | - | CE4 |
| CAZyme | HRGMv2_2212_3 | HRGMv2_2212_3_71 | 78980 | 79825 | - | CE4 |
| TF | HRGMv2_2212_3 | HRGMv2_2212_3_72 | 80025 | 80720 | - | GntR |
| pfam | HRGMv2_2212_3 | HRGMv2_2212_3_73 | 80895 | 81812 | - | Mem_trans | Mem_trans |
| TC | HRGMv2_2212_3 | HRGMv2_2212_3_74 | 82160 | 83716 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_2212_3_69
Type: TC
Location: 76554 - 78095 (-)
Type: TC
Location: 76554 - 78095 (-)
Gene ID: HRGMv2_2212_3_70
Type: CAZyme
Location: 78136 - 78966 (-)
Type: CAZyme
Location: 78136 - 78966 (-)
Gene ID: HRGMv2_2212_3_71
Type: CAZyme
Location: 78980 - 79825 (-)
Type: CAZyme
Location: 78980 - 79825 (-)
Gene ID: HRGMv2_2212_3_72
Type: TF
Location: 80025 - 80720 (-)
Type: TF
Location: 80025 - 80720 (-)
Gene ID: HRGMv2_2212_3_73
Type: pfam
Location: 80895 - 81812 (-)
Type: pfam
Location: 80895 - 81812 (-)
Gene ID: HRGMv2_2212_3_74
Type: TC
Location: 82160 - 83716 (-)
Type: TC
Location: 82160 - 83716 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerobutyricum
Species
Anaerobutyricum soehngenii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2212_3_69 | vegan > omnivore | 1.56154 | 0.00782 |
| HRGMv2_2212_3_72 | vegan > omnivore | 1.26699 | 0.00782 |
| HRGMv2_2212_3_73 | vegan > omnivore | 2.08302 | 0.00782 |