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Cluster: HRGMv2_2212_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2212_19 HRGMv2_2212_19_67 47004 47738 - 3.A.1.17.13
TC HRGMv2_2212_19 HRGMv2_2212_19_68 47779 48828 - 3.A.1.17.13
TC HRGMv2_2212_19 HRGMv2_2212_19_69 48865 49644 - 3.A.1.17.8
pfam HRGMv2_2212_19 HRGMv2_2212_19_70 49613 49909 - Thiamine_BP
TC HRGMv2_2212_19 HRGMv2_2212_19_71 50352 51746 + 2.A.25.1.9
CAZyme HRGMv2_2212_19 HRGMv2_2212_19_72 52142 53080 - GT2
CAZyme HRGMv2_2212_19 HRGMv2_2212_19_73 53352 55256 - CBM48 | GH13_9
Gene ID: HRGMv2_2212_19_67
Type: TC
Location: 47004 - 47738 (-)
Gene ID: HRGMv2_2212_19_68
Type: TC
Location: 47779 - 48828 (-)
Gene ID: HRGMv2_2212_19_69
Type: TC
Location: 48865 - 49644 (-)
Gene ID: HRGMv2_2212_19_70
Type: pfam
Location: 49613 - 49909 (-)
Gene ID: HRGMv2_2212_19_71
Type: TC
Location: 50352 - 51746 (+)
Gene ID: HRGMv2_2212_19_72
Type: CAZyme
Location: 52142 - 53080 (-)
Gene ID: HRGMv2_2212_19_73
Type: CAZyme
Location: 53352 - 55256 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2212_19_68 vegan > omnivore 2.32295 0.00782
HRGMv2_2212_19_68 vegetarian > omnivore 2.16984 0.04755
HRGMv2_2212_19_72 vegan > omnivore 1.44855 0.00782

🧭 Explore Read Mapping of CGC

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