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Cluster: HRGMv2_2212_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2212_13 HRGMv2_2212_13_11 12174 12965 - 3.D.6.1.2
TC HRGMv2_2212_13 HRGMv2_2212_13_12 12981 13556 - 3.D.6.1.2
TC HRGMv2_2212_13 HRGMv2_2212_13_13 13571 14329 - 3.D.6.1.2
TC HRGMv2_2212_13 HRGMv2_2212_13_14 14331 14960 - 3.D.6.1.2
TC HRGMv2_2212_13 HRGMv2_2212_13_15 14960 15913 - 3.D.6.1.2
TC HRGMv2_2212_13 HRGMv2_2212_13_16 15933 17246 - 3.D.6.1.2
pfam HRGMv2_2212_13 HRGMv2_2212_13_17 17573 17980 - NusG_II
CAZyme HRGMv2_2212_13 HRGMv2_2212_13_18 17952 18974 - GT2
Gene ID: HRGMv2_2212_13_11
Type: TC
Location: 12174 - 12965 (-)
Gene ID: HRGMv2_2212_13_12
Type: TC
Location: 12981 - 13556 (-)
Gene ID: HRGMv2_2212_13_13
Type: TC
Location: 13571 - 14329 (-)
Gene ID: HRGMv2_2212_13_14
Type: TC
Location: 14331 - 14960 (-)
Gene ID: HRGMv2_2212_13_15
Type: TC
Location: 14960 - 15913 (-)
Gene ID: HRGMv2_2212_13_16
Type: TC
Location: 15933 - 17246 (-)
Gene ID: HRGMv2_2212_13_17
Type: pfam
Location: 17573 - 17980 (-)
Gene ID: HRGMv2_2212_13_18
Type: CAZyme
Location: 17952 - 18974 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2212_13_17 vegan > omnivore 1.62078 0.00782

🧭 Explore Read Mapping of CGC

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