Cluster: HRGMv2_2212_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2212
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2212_12 | HRGMv2_2212_12_11 | 10232 | 11668 | - | GT5 |
| STP | HRGMv2_2212_12 | HRGMv2_2212_12_12 | 11819 | 12643 | - | Response_reg | Spo0A_C |
| STP | HRGMv2_2212_12 | HRGMv2_2212_12_13 | 12752 | 13564 | - | Response_reg | Spo0A_C |
| TC | HRGMv2_2212_12 | HRGMv2_2212_12_14 | 13947 | 15479 | + | 2.A.21.2.5 |
| NULL(UNKNOWN) | HRGMv2_2212_12 | HRGMv2_2212_12_15 | 15502 | 16398 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2212_12 | HRGMv2_2212_12_16 | 16889 | 18523 | - | 4.C.1.1.6 |
Gene ID: HRGMv2_2212_12_11
Type: CAZyme
Location: 10232 - 11668 (-)
Type: CAZyme
Location: 10232 - 11668 (-)
Gene ID: HRGMv2_2212_12_12
Type: STP
Location: 11819 - 12643 (-)
Type: STP
Location: 11819 - 12643 (-)
Gene ID: HRGMv2_2212_12_13
Type: STP
Location: 12752 - 13564 (-)
Type: STP
Location: 12752 - 13564 (-)
Gene ID: HRGMv2_2212_12_14
Type: TC
Location: 13947 - 15479 (+)
Type: TC
Location: 13947 - 15479 (+)
Gene ID: HRGMv2_2212_12_15
Type:
Location: 15502 - 16398 (+)
Type:
Location: 15502 - 16398 (+)
Gene ID: HRGMv2_2212_12_16
Type: TC
Location: 16889 - 18523 (-)
Type: TC
Location: 16889 - 18523 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerobutyricum
Species
Anaerobutyricum soehngenii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2212_12_13 | vegan > omnivore | 1.28802 | 0.00782 |
| HRGMv2_2212_12_15 | vegan > omnivore | 2.07267 | 0.00782 |
| HRGMv2_2212_12_16 | vegetarian > vegan | 1.30715 | 0.02346 |