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Cluster: HRGMv2_2211_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2211_2 HRGMv2_2211_2_78 86102 89296 - 9.B.34.1.2
TF HRGMv2_2211_2 HRGMv2_2211_2_79 89574 90473 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2211_2 HRGMv2_2211_2_80 90646 92937 + GT35
peptidase HRGMv2_2211_2 HRGMv2_2211_2_81 93100 94350 + S08.UPA
TC HRGMv2_2211_2 HRGMv2_2211_2_82 94816 96228 - 3.B.1.1.6
TC HRGMv2_2211_2 HRGMv2_2211_2_83 96335 97480 - 3.B.1.1.2
TC HRGMv2_2211_2 HRGMv2_2211_2_84 97531 97905 - 3.B.1.1.2
pfam HRGMv2_2211_2 HRGMv2_2211_2_85 97961 98755 - OAD_gamma
TC HRGMv2_2211_2 HRGMv2_2211_2_86 98773 100224 - 3.B.1.1.5
pfam HRGMv2_2211_2 HRGMv2_2211_2_87 100703 101143 - RbsD_FucU
STP HRGMv2_2211_2 HRGMv2_2211_2_88 101180 102295 - Peripla_BP_1
TC HRGMv2_2211_2 HRGMv2_2211_2_89 102416 103396 - 3.A.1.2.1
TC HRGMv2_2211_2 HRGMv2_2211_2_90 103410 104900 - 3.A.1.2.1
Gene ID: HRGMv2_2211_2_78
Type: TC
Location: 86102 - 89296 (-)
Gene ID: HRGMv2_2211_2_79
Type: TF
Location: 89574 - 90473 (-)
Gene ID: HRGMv2_2211_2_80
Type: CAZyme
Location: 90646 - 92937 (+)
Gene ID: HRGMv2_2211_2_81
Type: peptidase
Location: 93100 - 94350 (+)
Gene ID: HRGMv2_2211_2_82
Type: TC
Location: 94816 - 96228 (-)
Gene ID: HRGMv2_2211_2_83
Type: TC
Location: 96335 - 97480 (-)
Gene ID: HRGMv2_2211_2_84
Type: TC
Location: 97531 - 97905 (-)
Gene ID: HRGMv2_2211_2_85
Type: pfam
Location: 97961 - 98755 (-)
Gene ID: HRGMv2_2211_2_86
Type: TC
Location: 98773 - 100224 (-)
Gene ID: HRGMv2_2211_2_87
Type: pfam
Location: 100703 - 101143 (-)
Gene ID: HRGMv2_2211_2_88
Type: STP
Location: 101180 - 102295 (-)
Gene ID: HRGMv2_2211_2_89
Type: TC
Location: 102416 - 103396 (-)
Gene ID: HRGMv2_2211_2_90
Type: TC
Location: 103410 - 104900 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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