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Cluster: HRGMv2_2210_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_375 456001 458010 - GH42
TF HRGMv2_2210_1 HRGMv2_2210_1_376 458216 459022 + HTH_AraC | HTH_AraC
TC HRGMv2_2210_1 HRGMv2_2210_1_377 459111 459728 - 3.A.1.12.8
TC HRGMv2_2210_1 HRGMv2_2210_1_378 459725 460492 - 3.A.1.12.14
TC HRGMv2_2210_1 HRGMv2_2210_1_379 460517 461440 - 3.A.1.12.14
TC HRGMv2_2210_1 HRGMv2_2210_1_380 461461 462132 - 3.A.1.12.8
STP HRGMv2_2210_1 HRGMv2_2210_1_381 462223 462831 - Fer4 | Fer4
TF HRGMv2_2210_1 HRGMv2_2210_1_382 463271 463594 + DUF24
TC HRGMv2_2210_1 HRGMv2_2210_1_383 463697 464791 - 3.A.1.2.19
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_384 464840 466015 - GH179
Gene ID: HRGMv2_2210_1_375
Type: CAZyme
Location: 456001 - 458010 (-)
Gene ID: HRGMv2_2210_1_376
Type: TF
Location: 458216 - 459022 (+)
Gene ID: HRGMv2_2210_1_377
Type: TC
Location: 459111 - 459728 (-)
Gene ID: HRGMv2_2210_1_378
Type: TC
Location: 459725 - 460492 (-)
Gene ID: HRGMv2_2210_1_379
Type: TC
Location: 460517 - 461440 (-)
Gene ID: HRGMv2_2210_1_380
Type: TC
Location: 461461 - 462132 (-)
Gene ID: HRGMv2_2210_1_381
Type: STP
Location: 462223 - 462831 (-)
Gene ID: HRGMv2_2210_1_382
Type: TF
Location: 463271 - 463594 (+)
Gene ID: HRGMv2_2210_1_383
Type: TC
Location: 463697 - 464791 (-)
Gene ID: HRGMv2_2210_1_384
Type: CAZyme
Location: 464840 - 466015 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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