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Cluster: HRGMv2_2210_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_325 391010 392929 - GH127
TF HRGMv2_2210_1 HRGMv2_2210_1_326 392926 394473 - HTH_AraC | HTH_AraC
STP HRGMv2_2210_1 HRGMv2_2210_1_327 394554 396374 - dCache_1
TC HRGMv2_2210_1 HRGMv2_2210_1_328 396445 397266 - 3.A.1.1.34
TC HRGMv2_2210_1 HRGMv2_2210_1_329 397266 398138 - 3.A.1.1.42
STP HRGMv2_2210_1 HRGMv2_2210_1_330 398248 399615 - SBP_bac_1
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_331 399740 402157 - GH95
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_332 402180 404795 - GH106
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_333 404785 406842 - GH42
Gene ID: HRGMv2_2210_1_325
Type: CAZyme
Location: 391010 - 392929 (-)
Gene ID: HRGMv2_2210_1_326
Type: TF
Location: 392926 - 394473 (-)
Gene ID: HRGMv2_2210_1_327
Type: STP
Location: 394554 - 396374 (-)
Gene ID: HRGMv2_2210_1_328
Type: TC
Location: 396445 - 397266 (-)
Gene ID: HRGMv2_2210_1_329
Type: TC
Location: 397266 - 398138 (-)
Gene ID: HRGMv2_2210_1_330
Type: STP
Location: 398248 - 399615 (-)
Gene ID: HRGMv2_2210_1_331
Type: CAZyme
Location: 399740 - 402157 (-)
Gene ID: HRGMv2_2210_1_332
Type: CAZyme
Location: 402180 - 404795 (-)
Gene ID: HRGMv2_2210_1_333
Type: CAZyme
Location: 404785 - 406842 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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