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Cluster: HRGMv2_2210_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2210_1 HRGMv2_2210_1_2822 3351108 3352016 + 3.A.1.1.34
TC HRGMv2_2210_1 HRGMv2_2210_1_2823 3352017 3352832 + 3.A.1.1.48
TF HRGMv2_2210_1 HRGMv2_2210_1_2824 3352909 3354432 + HTH_AraC | HTH_AraC
TC HRGMv2_2210_1 HRGMv2_2210_1_2825 3354454 3356250 + 8.A.59.2.1
TC HRGMv2_2210_1 HRGMv2_2210_1_2826 3356219 3357553 + 2.A.2.3.6
TC HRGMv2_2210_1 HRGMv2_2210_1_2827 3357776 3358774 + 8.A.5.1.3
NULL(UNKNOWN) HRGMv2_2210_1 HRGMv2_2210_1_2828 3359144 3359377 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2210_1 HRGMv2_2210_1_2829 3359965 3360828 - Phage_integrase | Phage_int_SAM_1
TC HRGMv2_2210_1 HRGMv2_2210_1_2830 3361271 3362548 + 8.A.59.4.1
TC HRGMv2_2210_1 HRGMv2_2210_1_2831 3362636 3363937 - 2.A.66.1.37
pfam HRGMv2_2210_1 HRGMv2_2210_1_2832 3364319 3365512 + DUF4317
TF HRGMv2_2210_1 HRGMv2_2210_1_2833 3365613 3367058 - GntR | GntR
TC HRGMv2_2210_1 HRGMv2_2210_1_2834 3367134 3369914 - 2.A.21.9.2
STP HRGMv2_2210_1 HRGMv2_2210_1_2835 3370259 3371455 + Aminotran_1_2
STP HRGMv2_2210_1 HRGMv2_2210_1_2836 3371784 3372407 + TetR_N
TC HRGMv2_2210_1 HRGMv2_2210_1_2837 3372568 3373464 + 3.A.1.126.1
TC HRGMv2_2210_1 HRGMv2_2210_1_2838 3373464 3374261 + 3.A.1.126.1
CAZyme HRGMv2_2210_1 HRGMv2_2210_1_2839 3374384 3375538 - GH109
Gene ID: HRGMv2_2210_1_2822
Type: TC
Location: 3351108 - 3352016 (+)
Gene ID: HRGMv2_2210_1_2823
Type: TC
Location: 3352017 - 3352832 (+)
Gene ID: HRGMv2_2210_1_2824
Type: TF
Location: 3352909 - 3354432 (+)
Gene ID: HRGMv2_2210_1_2825
Type: TC
Location: 3354454 - 3356250 (+)
Gene ID: HRGMv2_2210_1_2826
Type: TC
Location: 3356219 - 3357553 (+)
Gene ID: HRGMv2_2210_1_2827
Type: TC
Location: 3357776 - 3358774 (+)
Gene ID: HRGMv2_2210_1_2828
Type:
Location: 3359144 - 3359377 (-)
Gene ID: HRGMv2_2210_1_2829
Type: pfam
Location: 3359965 - 3360828 (-)
Gene ID: HRGMv2_2210_1_2830
Type: TC
Location: 3361271 - 3362548 (+)
Gene ID: HRGMv2_2210_1_2831
Type: TC
Location: 3362636 - 3363937 (-)
Gene ID: HRGMv2_2210_1_2832
Type: pfam
Location: 3364319 - 3365512 (+)
Gene ID: HRGMv2_2210_1_2833
Type: TF
Location: 3365613 - 3367058 (-)
Gene ID: HRGMv2_2210_1_2834
Type: TC
Location: 3367134 - 3369914 (-)
Gene ID: HRGMv2_2210_1_2835
Type: STP
Location: 3370259 - 3371455 (+)
Gene ID: HRGMv2_2210_1_2836
Type: STP
Location: 3371784 - 3372407 (+)
Gene ID: HRGMv2_2210_1_2837
Type: TC
Location: 3372568 - 3373464 (+)
Gene ID: HRGMv2_2210_1_2838
Type: TC
Location: 3373464 - 3374261 (+)
Gene ID: HRGMv2_2210_1_2839
Type: CAZyme
Location: 3374384 - 3375538 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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