Cluster: HRGMv2_2210_CGC47
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2210
- CGC Family ID: CGCFAM_08124
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2388 | 2805479 | 2807428 | + | GH31_4 |
| sulfatase | HRGMv2_2210_1 | HRGMv2_2210_1_2389 | 2807834 | 2809567 | + | S1_17 |
| STP | HRGMv2_2210_1 | HRGMv2_2210_1_2390 | 2809666 | 2811000 | + | SBP_bac_1 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_2391 | 2811056 | 2811937 | + | 3.A.1.1.36 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_2392 | 2811937 | 2812758 | + | 3.A.1.1.34 |
| sulfatase | HRGMv2_2210_1 | HRGMv2_2210_1_2393 | 2812763 | 2814259 | + | S1_11 |
| sulfatase | HRGMv2_2210_1 | HRGMv2_2210_1_2394 | 2814237 | 2815631 | + | S1_28 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_2395 | 2815719 | 2817473 | + | 9.B.33.1.1 |
| TF | HRGMv2_2210_1 | HRGMv2_2210_1_2396 | 2817576 | 2819039 | + | HTH_AraC |
| pfam | HRGMv2_2210_1 | HRGMv2_2210_1_2397 | 2819042 | 2820109 | + | URO-D |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2398 | 2820206 | 2821705 | - | GH29 |
| pfam | HRGMv2_2210_1 | HRGMv2_2210_1_2399 | 2821749 | 2822807 | - | URO-D |
| TF | HRGMv2_2210_1 | HRGMv2_2210_1_2400 | 2822913 | 2823731 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2401 | 2824042 | 2827731 | + | GH50 |
| pfam | HRGMv2_2210_1 | HRGMv2_2210_1_2402 | 2827971 | 2829446 | - | DUF772 |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2403 | 2829672 | 2830895 | + | GH43_29 |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2404 | 2830963 | 2835012 | + | GH86 |
| pfam | HRGMv2_2210_1 | HRGMv2_2210_1_2405 | 2835243 | 2835554 | + | GIIM |
| CAZyme | HRGMv2_2210_1 | HRGMv2_2210_1_2406 | 2835818 | 2838196 | + | GH3 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_2407 | 2838505 | 2839443 | + | 3.A.1.1.10 |
| TC | HRGMv2_2210_1 | HRGMv2_2210_1_2408 | 2839460 | 2840329 | + | 3.A.1.1.10 |
Gene ID: HRGMv2_2210_1_2388
Type: CAZyme
Location: 2805479 - 2807428 (+)
Type: CAZyme
Location: 2805479 - 2807428 (+)
Gene ID: HRGMv2_2210_1_2389
Type: sulfatase
Location: 2807834 - 2809567 (+)
Type: sulfatase
Location: 2807834 - 2809567 (+)
Gene ID: HRGMv2_2210_1_2390
Type: STP
Location: 2809666 - 2811000 (+)
Type: STP
Location: 2809666 - 2811000 (+)
Gene ID: HRGMv2_2210_1_2391
Type: TC
Location: 2811056 - 2811937 (+)
Type: TC
Location: 2811056 - 2811937 (+)
Gene ID: HRGMv2_2210_1_2392
Type: TC
Location: 2811937 - 2812758 (+)
Type: TC
Location: 2811937 - 2812758 (+)
Gene ID: HRGMv2_2210_1_2393
Type: sulfatase
Location: 2812763 - 2814259 (+)
Type: sulfatase
Location: 2812763 - 2814259 (+)
Gene ID: HRGMv2_2210_1_2394
Type: sulfatase
Location: 2814237 - 2815631 (+)
Type: sulfatase
Location: 2814237 - 2815631 (+)
Gene ID: HRGMv2_2210_1_2395
Type: TC
Location: 2815719 - 2817473 (+)
Type: TC
Location: 2815719 - 2817473 (+)
Gene ID: HRGMv2_2210_1_2396
Type: TF
Location: 2817576 - 2819039 (+)
Type: TF
Location: 2817576 - 2819039 (+)
Gene ID: HRGMv2_2210_1_2397
Type: pfam
Location: 2819042 - 2820109 (+)
Type: pfam
Location: 2819042 - 2820109 (+)
Gene ID: HRGMv2_2210_1_2398
Type: CAZyme
Location: 2820206 - 2821705 (-)
Type: CAZyme
Location: 2820206 - 2821705 (-)
Gene ID: HRGMv2_2210_1_2399
Type: pfam
Location: 2821749 - 2822807 (-)
Type: pfam
Location: 2821749 - 2822807 (-)
Gene ID: HRGMv2_2210_1_2400
Type: TF
Location: 2822913 - 2823731 (+)
Type: TF
Location: 2822913 - 2823731 (+)
Gene ID: HRGMv2_2210_1_2401
Type: CAZyme
Location: 2824042 - 2827731 (+)
Type: CAZyme
Location: 2824042 - 2827731 (+)
Gene ID: HRGMv2_2210_1_2402
Type: pfam
Location: 2827971 - 2829446 (-)
Type: pfam
Location: 2827971 - 2829446 (-)
Gene ID: HRGMv2_2210_1_2403
Type: CAZyme
Location: 2829672 - 2830895 (+)
Type: CAZyme
Location: 2829672 - 2830895 (+)
Gene ID: HRGMv2_2210_1_2404
Type: CAZyme
Location: 2830963 - 2835012 (+)
Type: CAZyme
Location: 2830963 - 2835012 (+)
Gene ID: HRGMv2_2210_1_2405
Type: pfam
Location: 2835243 - 2835554 (+)
Type: pfam
Location: 2835243 - 2835554 (+)
Gene ID: HRGMv2_2210_1_2406
Type: CAZyme
Location: 2835818 - 2838196 (+)
Type: CAZyme
Location: 2835818 - 2838196 (+)
Gene ID: HRGMv2_2210_1_2407
Type: TC
Location: 2838505 - 2839443 (+)
Type: TC
Location: 2838505 - 2839443 (+)
Gene ID: HRGMv2_2210_1_2408
Type: TC
Location: 2839460 - 2840329 (+)
Type: TC
Location: 2839460 - 2840329 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Muricomes
Species
Muricomes contortus_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.